FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_NEIG1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 82/235 (34.89%), Postives = 122/235 (51.91%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  EL+A YG+ V  G+   + +E   A   +    K  VVK+Q+ AGGRG         GGV +VK +E+ +++A  ++G  LVT QT   G+ V+ V +CE +  V  E+Y   ++DR T     +  ++GG  IE +A + P  I KV +D   G+    A +V   L  K    N+  + +   YK F E+D  L E+NPLA      L   D K+  D NA +R
Sbjct:    1 MNLHEYQAKELLASYGLPVQGGILAHNGEEAAAAYDKL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSREKAKEVAESLIGTNLVTYQTDANGQPVNSVLVCEDMYPVQTELYLGAVVDRSTRRVTFMASTEGGVEIEKVAAETPEKIFKVTVDPLVGLQPCQAREVAFQLGLKDKQINEFAKLMTGAYKAFVENDFALFEVNPLAVRENGALACVDGKIGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_METJA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Methanocaldococcus jannaschii GN=sucC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 83/233 (35.62%), Postives = 125/233 (53.65%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + +HEY+   +  KYGI VP+   V+  D++     D     KE+V+K+Q+L GGRG    K+G  G +    KEE    A ++  + +       +G+ V K+ + EKL +  E Y +I++DR    P+II  ++GG  IE++AEK P  I+K  IDV        A  +V        +     + + KLYK+F E D T++EINPL  T    + AADA L+ DD+AAFR
Sbjct:    1 MKLHEYEAKNIFKKYGIPVPESFLVSKEDDLNSINVD-----KEVVLKAQVLVGGRG----KAG--GILFASNKEEFIKKAEELFNKEV-------KGEKVEKILVEEKLPIEKEYYVSIIIDRDAKKPLIIFSTEGGVDIEEVAEKNPEKIIKYHIDVRKPFLPYIARWIVKEAKLPSNEIGKVADVIYKLYKIFKELDATMVEINPLVITKDGNVYAADAVLHLDDDAAFR 215          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HAEIG (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haemophilus influenzae (strain PittGG) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 84/236 (35.59%), Postives = 117/236 (49.58%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N+HEYQ  +L   YG+ V  G    SVDEV      +  D  +   K Q+ AGGRG         GGV +V+  EE    A K LGQ LVT QT   G+ V+++Y  E   +  E Y + ++DR +   + I    GG  IE++A+  P+++ KV ID   G       ++   L    A      +    L +LF E D +L+E+NPL  T    LV  DAK+  DDNA FR K
Sbjct:    1 MNLHEYQAKQLFEHYGLPVKNGAVCQSVDEVDLVLAQLSGD--KWAAKCQVHAGGRGKA-------GGVKLVQDVEEARSFAEKWLGQRLVTFQTDKLGQPVNQIYFEETCDIDKEFYLSAVVDRASQKVVFIASPAGGMDIEEVAQNTPHLLHKVEIDPLFGGLPYQGRELAFKLGLSDAQNKQFTDIFMGLSRLFLEKDLSLVEVNPLVLTQQGNLVCLDAKIAVDDNALFRHK 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CHLCV (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydophila caviae GN=sucC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 78/238 (32.77%), Postives = 129/238 (54.20%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAG--KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +++HEYQ  +L+  Y I +P     +SV+E ++A +++  D    VVK Q+ AGGRG        K G  +V K   + LA   K+L    V+ QT  +   V KV +   +++  E Y A+++DRK   P I+    GG  IE++A+KYP+ ++ VP+  F  + +    +++  +  +   R    + +KKL + F ++D +LLEINPL  T    L+  DAK+  DDNA +R  +
Sbjct:    1 MHLHEYQAKDLLVSYDIAIPPYRVASSVEEGQQALKELAIDAG--VVKVQVHAGGRG--------KNGGVVVAKSPSDILAAVDKLLRMRFVSNQTSGEALPVEKVLITPLVNIAAEYYLAVIMDRKNRCPAIMLSKAGGVDIEEVAQKYPDQLLTVPLTPFARLYNYQIRQIIKFMNWEGDIRKQGAQLIKKLVQCFYDNDASLLEINPLVLTQEGDLLVLDAKITIDDNALYRHPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_THIDA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Thiobacillus denitrificans (strain ATCC 25259) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.584e-29
Identity = 75/236 (31.78%), Postives = 124/236 (52.54%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N+HEYQ  +++    +N P+G+A  S D    A +++    +  VVK+QI AGGRG         GGV +V   + V  +A  +LG+ LVT Q  P G+ V  V + E L +  E+Y ++++DR +    ++  + GG  IE +A   P  ++    D   G+ D     +   L        D    + +LY++F  +D +LLEINPL  T+  +++  D K++ DDNA +R+K
Sbjct:    1 MNLHEYQAKQVLRSSNLNTPRGIAATSADAAADAAREL--GGEAWVVKAQIHAGGRGKA-------GGVKVVTSIDAVRSVAAALLGKPLVTVQNAPDGQPVHTVLVEETLPIARELYLSLLVDRASERVAVVASAAGGMDIEQVAHATPEKVLTEICDPLLGVQDFQCRALAFALGLGGDAYKDFCRLLPQLYRVFVANDLSLLEINPLVVTTDNRVLPLDCKMSVDDNALYRRK 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_THICR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Thiomicrospira crunogena (strain XCL-2) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.584e-29
Identity = 81/235 (34.47%), Postives = 122/235 (51.91%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ   L  +YGI VPKG+ +  + ++  A   +  D K  VVK+QI AG RG         GGV +V+  EE E  A ++LG  L T QT  +   ++ + + + L +  E Y ++M+DR T     +  + GG  IE +AE  P  I+ V +D   G+      ++   L             ++  Y+L  + D +LLEINPL  T+  +LVA DAK+N D NA +RQ
Sbjct:    1 MNLHEYQAKSLFQQYGIPVPKGVMINDLADLDAALGQI--DSKGWVVKAQIHAGARGKA-------GGVKLVETAEEAEQAASELLGSSLATIQTAGKALPINALLIEQTLDIYQEFYLSLMVDRVTKTHTFVISAAGGMDIELVAEASPEKILSVHVDPTVGLMPYQCREIAFALGLTGTAFKQMASVMQGFYQLALDKDVSLLEINPLVLTAENELVALDAKVNIDSNALYRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HAEIE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haemophilus influenzae (strain PittEE) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.584e-29
Identity = 84/236 (35.59%), Postives = 116/236 (49.15%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N+HEYQ  +L   YG+ V  G    SVDEV      +  D  +   K Q+ AGGRG         GGV +V+  EE    A K LGQ LVT QT   G+ V+++Y  E   +  E Y + ++DR +   + I    GG  IE++A+  P+++ KV ID   G       ++   L           +    L +LF E D +LLE+NPL  T    LV  DAK+  DDNA FR K
Sbjct:    1 MNLHEYQAKQLFEHYGLPVKNGAVCQSVDEVDLVLAQLSGD--KWAAKCQVHAGGRGKA-------GGVKLVQDVEEARSFAEKWLGQRLVTFQTDKLGQPVNQIYFEETCDIDKEFYLSAVVDRASQKVVFIASPAGGMDIEEVAQNTPHLLHKVEIDPLFGGLPYQGRELAFKLGLSGTQNKQFTDIFMGLSRLFLEKDLSLLEVNPLVLTQQGNLVCLDAKIAVDDNALFRHK 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_COLP3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.584e-29
Identity = 82/241 (34.02%), Postives = 124/241 (51.45%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748
            +N+HEYQ  +L A+YG+ V +G A  +  E  +A   +  D    VVK+Q+ AGGRG         GGV +VK KEE+++ A   LG+ LVT QT   G+ V+K+ +     + NE+Y   ++DR +   + +  ++GG  IE +AE+ P +I +  ID   G     A ++   L          ++    L K+F + D  LLEINPL  T    L   D K+  D NA +RQ +   F
Sbjct:    1 MNLHEYQAKQLFAEYGLPVSEGFACDTPQEAAEAADKIGGDM--WVVKTQVHAGGRGKA-------GGVKLVKSKEEIKEFAQHWLGKNLVTYQTDANGQPVAKILVESCTDIANELYLGAVVDRASQRVVFMASTEGGVDIEKIAEETPELIHQAEIDPLVGAQPYQARELGFKLGLNPTQMKQFVKIFMGLAKMFEDCDFALLEINPLVITDEGNLHCLDGKIGIDGNAIYRQPKMRAF 232          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEFS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas fluorescens (strain SBW25) GN=sucC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.987e-29
Identity = 84/245 (34.29%), Postives = 129/245 (52.65%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748
            +N+HEYQG +L A+YG+ V KG AV + +   +A   +     E VVK+Q+ AGGRG         GGV +V+ KE+ +  A + LG+ LVT QT   G+ V+K+ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P  I+K  ID   G       +    LA ++      + Q  K++    KLF + D  LLE+NPL   +   L   DAK+N D NA +RQ +   F
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGYAVDTPEAAAEACDKI--GGTEWVVKAQVHAGGRGKA-------GGVKLVRSKEDAKAFAQQWLGKRLVTYQTDANGQPVTKILVESCTDIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKIAEETPEKILKATIDPLVGAQPFQGRE----LAFQLGLEGKQVAQFAKIFVGLAKLFQDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYRQPKLKTF 232          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEF5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=sucC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.987e-29
Identity = 84/245 (34.29%), Postives = 128/245 (52.24%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748
            +N+HEYQG +L A+YG+ V KG AV + +E  +A   +     E VVK+Q+ AGGRG         GGV +V+ KE+ +  A + LG+ LVT QT   G+ V+K+ +     +  E+Y   ++DR +   + +  ++GG  IE +A   P  I+K  ID   G       +    LA ++      + Q  K++    KLF + D  LLE+NPL   +   L   DAK+N D NA +RQ +   F
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGYAVDTPEEAAEACDKI--GGSEWVVKAQVHAGGRGKA-------GGVKLVRSKEDAKAFAQQWLGKRLVTYQTDANGQPVTKILVESCTDIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKIAHDTPEKILKATIDPLVGAQPFQGRE----LAFQLGLEGKQVAQFAKIFVGLAKLFQDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYRQPKLKTF 232          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_NEIG13.510e-2934.89Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_METJA3.510e-2935.62Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HAEIG3.510e-2935.59Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLCV3.510e-2932.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_THIDA4.584e-2931.78Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_THICR4.584e-2934.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HAEIE4.584e-2935.59Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_COLP34.584e-2934.02Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEFS5.987e-2934.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEF55.987e-2934.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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