FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_KLEP3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Klebsiella pneumoniae (strain 342) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.881e-28
Identity = 82/239 (34.31%), Postives = 123/239 (51.46%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +VK KEE+   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I K+ ID   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVKSKEEIRAFAEHWLGKRLVTYQTDANGQPVNQILVEAATDIDKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKIAIDPLAGPMPYQGRE----LAFKLGLEGKQVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HAEIN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haemophilus influenzae GN=sucC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.881e-28
Identity = 82/239 (34.31%), Postives = 119/239 (49.79%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L   YG+ V  G    SV++V      +     +   K Q+ AGGRG         GGV +V+  EE    A K LGQ LVT QT   G+ V+++Y  E   +  E Y + ++DR +   + I  S+GG +IE++ +  P+++ KV ID   G       ++   L           +    L +LF E D +LLE+NPL  T    LV  DAK++ DDNA FR K  L
Sbjct:    1 MNLHEYQAKQLFEHYGLPVKNGAVCQSVEDVDLVLAQL--SGGKWAAKCQVHAGGRGKA-------GGVKLVQDVEEARAFAEKWLGQRLVTFQTDKLGQPVNQIYFEETCDIDKEFYLSAVVDRTSQKVVFIASSEGGMNIEEVVQNSPHLLHKVTIDPLFGGLPYQGRELAFKLGLSGTQNKQFTDIFMGLSRLFLEKDLSLLEVNPLVLTPQGNLVCLDAKISVDDNALFRHKDLL 230          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_AZOVD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.881e-28
Identity = 83/241 (34.44%), Postives = 126/241 (52.28%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V +G+A+ + +   +A   +  D    V K Q+ AGGRG         GGV +VK +EE +  A   LG+ LVT QT   G+ V K+ +     +  E+Y   ++DR +   + +  ++GG +IE +A + P  I+K  ID   G     A      LA ++    D ++Q   ++    KLF E D  L+E+NPL       L+  DAK+N D NA FRQ R
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSRGVAIDTPEAAAEACDRIGGDC--WVAKVQVHAGGRGKA-------GGVKLVKSREEAKVFAVNWLGKRLVTYQTDASGQPVGKILVEACTEIERELYLGAVVDRSSRRIVFMASTEGGVNIEQVAHETPEKILKASIDPLVGAQPFQAR----DLAFRLGLEGDQLKQFTHIFIGLAKLFQEHDLALVEVNPLVVQKDGNLLCLDAKINLDTNALFRQPR 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEHT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.619e-28
Identity = 81/237 (34.18%), Postives = 122/237 (51.48%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A+YG+ V  G A  + +E   A + +  D    VVK+Q+ AGGRG         GGV +VK  +EV+  A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR +   + +  ++GG  IE +AE+ P +I K  ID   G     A ++   L          ++    L K+F + D  LLEINPL  T    L   D K+  D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEYGLPVSTGYACDTPEEAAAAAEKIGGDM--WVVKTQVHAGGRGKA-------GGVKLVKTIDEVKAFAANWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRASRKVVFMASTEGGVEIETVAEETPELIHKAEIDPLVGPQAYQARELGFKLGLNPVQMKQFVKIFMGLGKMFTDFDFALLEINPLVITDEGNLHCLDGKIGIDGNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ALTMD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.619e-28
Identity = 81/237 (34.18%), Postives = 120/237 (50.63%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L  +YG+ V +G A  +     +A   +    +E VVK Q+ AGGRG         GGV +VK K+++   A   LG+ LVT QT   G+ VSK+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P  I+K  ID   G     A ++   L           +    L K+F E D  L+EINPL   +   L   DAK+  D NA +RQ +
Sbjct:    1 MNLHEYQGKQLFKEYGLPVSEGYAADTAQGAVEAADRI--GGEEWVVKCQVHAGGRGKA-------GGVKLVKNKDDIRAFAENWLGKNLVTFQTDENGQPVSKILVESCTDIANELYLGAVVDRTTRRVVFMASTEGGVEIETVAEETPEKILKAEIDPIVGPQPYQAREMAFALGLSGVQIKQFTQIFLGLAKMFEELDVALIEINPLVIKTDGNLHCLDAKVGIDGNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ALCBS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.619e-28
Identity = 81/234 (34.62%), Postives = 121/234 (51.71%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  +L A YG+ V  G A  + +EV    +++  D  + VVK+Q+ AGGRG         GGV +V   E+    A K LG+ LVT QT   G+ VSK+ +     +  E+Y + +LDR +   + +  ++GG  IE +AE+ P  I+K  ID   G     A ++   L  +    N   +    L KLF + D  L+E+NPL  T    L   DAK+N D +A +R
Sbjct:    1 MNLHEYQSKQLFADYGLPVSTGFACDTPEEVAAKAKEIGGD--KWVVKAQVHAGGRGKA-------GGVKLVDTPEDAAAFAKKWLGKQLVTFQTDEHGQPVSKILVETCTDIAKELYLSAVLDRASRRVVFMASTEGGVDIETVAEETPEKILKAEIDPLVGAQPYQAREIAFKLGLEGKQVNQFAKIFVGLAKLFVDKDLALIEVNPLVITDTGDLHCLDAKINVDGSALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACIF5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.619e-28
Identity = 79/234 (33.76%), Postives = 124/234 (52.99%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ   L+A+ G+ VP+ +   SV E     +++       VVK+Q+ AGGRG         GGV +V    +VE  A ++LG+ LVT QTGPQG+ V+ + + E   +  E+Y A+M+DR  A    +   +GG  IE+LA   P  + +V ++   G     A ++                 ++ +Y+L    D  ++EINPLA T+  +L+A DAK+  DDNA +R
Sbjct:    1 MNLHEYQAKRLLAEEGVPVPRAIPAFSVREAVNQAREL--GGPAWVVKAQVHAGGRGKA-------GGVRMVDSIAQVEKAAQELLGKPLVTAQTGPQGQHVAALLIEEPSRIARELYLALMVDRGQARITFLATREGGVDIEELAASRPEALHRVVVEPSTGFLPFQARQLGFQFGLDAGQVQQLTRIMQGMYRLAQRLDALMVEINPLAITAEGRLLALDAKVVMDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACIF2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.619e-28
Identity = 79/234 (33.76%), Postives = 124/234 (52.99%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ   L+A+ G+ VP+ +   SV E     +++       VVK+Q+ AGGRG         GGV +V    +VE  A ++LG+ LVT QTGPQG+ V+ + + E   +  E+Y A+M+DR  A    +   +GG  IE+LA   P  + +V ++   G     A ++                 ++ +Y+L    D  ++EINPLA T+  +L+A DAK+  DDNA +R
Sbjct:    1 MNLHEYQAKRLLAEEGVPVPRAIPAFSVREAVNQAREL--GGPAWVVKAQVHAGGRGKA-------GGVRMVDSIAQVEKAAQELLGKPLVTAQTGPQGQHVAALLIEEPSRIARELYLALMVDRGQARITFLATREGGVDIEELAASRPEALHRVVVEPSTGFLPFQARQLGFQFGLDAGQVQQLTRIMQGMYRLAQRLDALMVEINPLAITAEGRLLALDAKVVMDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHISS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shigella sonnei (strain Ss046) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHIFL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shigella flexneri GN=sucC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_KLEP33.881e-2834.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HAEIN3.881e-2834.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AZOVD3.881e-2834.44Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEHT6.619e-2834.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ALTMD6.619e-2834.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ALCBS6.619e-2834.62Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIF56.619e-2833.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIF26.619e-2833.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHISS8.645e-2833.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHIFL8.645e-2833.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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