FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ECO8A (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O8 (strain IAI1) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 2 
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226
[Close]
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ECO7I (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 2 
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226
[Close]
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ECO5E (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 2 
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226
[Close]
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O157:H7 GN=sucC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 2 
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226
[Close]
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ECO55 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli (strain 55989 / EAEC) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 2 
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226
[Close]
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ECO24 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 2 
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226
[Close]
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_DICNV (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Dichelobacter nodosus (strain VCS1703A) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 77/236 (32.63%), Postives = 124/236 (52.54%), Query Frame = 2 
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N+HEYQ   L+   GI  P+G+ + +  E K+A Q +       VVK+QI +GGRG         GG+   +  +EV  ++  MLG  L T+Q+   G  +++V + E+   +   Y A+ LDR     + I    GGT IE +AE  P  I+   ++   G +   +A+V   L    + +    + + +LY+LF ++D TLLE+NPL  T   + +  DAK++ DDNA FR +
Sbjct:    1 MNLHEYQAKALLRAAGIKTPRGIIIKNSVEAKEAAQQL--GGNRWVVKAQIHSGGRGKA-------GGIKTAQTLDEVHHISAAMLGSRLKTEQSSADGLPINEVLIEEECRAIATYYLALTLDRPRQQIVFIASMAGGTEIETVAETNPEAIIYAGVNPAIGFSPYLSARVGGALQLDKSYQLPLTKLMNRLYQLFIDNDLTLLELNPLIITEDHEFLPLDAKISIDDNALFRHQ 227
[Close]
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHIBS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shigella boydii serotype 4 (strain Sb227) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27
Identity = 80/239 (33.47%), Postives = 121/239 (50.63%), Query Frame = 2 
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPQLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226
[Close]
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHIB3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27
Identity = 80/239 (33.47%), Postives = 121/239 (50.63%), Query Frame = 2 
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPQLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226
[Close]
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEPF (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas fluorescens (strain Pf0-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27
Identity = 82/245 (33.47%), Postives = 126/245 (51.43%), Query Frame = 2 
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748
            +N+HEYQG +L A+YG+ V  G AV + +   +A   +     E VVK+Q+ AGGRG         GGV +V+ KE+ +  A + LG+ LVT QT   G+ V+K+ +     +  E+Y   ++DR +   + +  ++GG  IE +A   P  I+K  ID   G       +    LA ++      + Q  K++    KLF + D  LLE+NPL   +   L   DAK+N D NA +RQ +   F
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSTGFAVDTPEAAAEACDKI--GGNEWVVKAQVHAGGRGKS-------GGVKLVRSKEDAKAFAQQWLGKRLVTYQTDANGQPVTKILVESCTDIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKIAHDTPEKILKATIDPLVGAQPFQGRE----LAFQLGLEGKQVAQFAKIFVGLAKLFKDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYRQPKLKTF 232
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_ECO8A8.645e-2833.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECO7I8.645e-2833.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECO5E8.645e-2833.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECO578.645e-2833.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECO558.645e-2833.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ECO248.645e-2833.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_DICNV8.645e-2832.63Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHIBS1.129e-2733.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHIB31.129e-2733.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEPF1.129e-2733.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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