FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_YERPP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pestis (strain Pestoides F) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G       +    LA K+      + Q  K++     LF E D  ++EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTGPQPYQGRE----LAFKLGLTGKQVGQFTKIFMGLATLFLERDLAMVEINPLVVTKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_YERPN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G       +    LA K+      + Q  K++     LF E D  ++EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTGPQPYQGRE----LAFKLGLTGKQVGQFTKIFMGLATLFLERDLAMVEINPLVVTKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_YERPG (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pestis bv. Antiqua (strain Angola) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G       +    LA K+      + Q  K++     LF E D  ++EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTGPQPYQGRE----LAFKLGLTGKQVGQFTKIFMGLATLFLERDLAMVEINPLVVTKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_YERPE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pestis GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G       +    LA K+      + Q  K++     LF E D  ++EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTGPQPYQGRE----LAFKLGLTGKQVGQFTKIFMGLATLFLERDLAMVEINPLVVTKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_YERPB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G       +    LA K+      + Q  K++     LF E D  ++EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTGPQPYQGRE----LAFKLGLTGKQVGQFTKIFMGLATLFLERDLAMVEINPLVVTKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_YERPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G       +    LA K+      + Q  K++     LF E D  ++EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTGPQPYQGRE----LAFKLGLTGKQVGQFTKIFMGLATLFLERDLAMVEINPLVVTKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_YERP3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G       +    LA K+      + Q  K++     LF E D  ++EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTGPQPYQGRE----LAFKLGLTGKQVGQFTKIFMGLATLFLERDLAMVEINPLVVTKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HALMA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haloarcula marismortui GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 83/238 (34.87%), Postives = 129/238 (54.20%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV--DGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            + +HEYQ  ++ A  GI  P      +VDE   A +++ +P    + +K+Q+  GGRG         GG+ +V+ KEE  + A  ++G  L       +G  VSKV + E +  VNE+Y  + +DR    P+ +  +KGG +IE++AE+ P+ I +  ID   G+    A KVV   G+  +VA  ND    +  LY+L+ + D    EINPL  TS  +++AADA +N D +A FRQ
Sbjct:    1 MRLHEYQAKQVFADAGIPTPASQLAETVDEAVDAAEEIGYP----VAIKAQVHVGGRGKA-------GGIKLVESKEEAREAAEDIIGMDL-------KGYHVSKVLVEEAVDFVNELYVGVTMDRGEGRPVAMVSTKGGVNIEEVAEEDPDAIAREHIDPAFGMHPFQARKVVYEAGVDREVA--NDVASVLTTLYQLWDDRDGADTEINPLMITSDDEVIAADAVMNVDGDALFRQ 218          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BEUC1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.129e-26
Identity = 75/241 (31.12%), Postives = 126/241 (52.28%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVV-KSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV--DGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRY 739
            +++ EYQ  ++  K+G+ V  G+   +VDE + A + +      +VV K+Q+  GGRG         GGV + +  EE  + A ++LG  +       +G  V +V + E  S+  E YF+++LDR     + +   +GG  IE LA + P  + +V +D   GI    AA++V   G A  VA      + ++KL+ ++   D TL+E+NPL  T+  +++A D K+  DDNA FR   +
Sbjct:    1 MDLFEYQARDVFEKHGVPVLGGIVATTVDEARAAAETLTSGAGSVVVVKAQVKTGGRGKA-------GGVKLARSPEEAAEAAEQILGMDI-------KGHTVHRVMIAEGASIAEEYYFSVLLDRANRSYLAMASVEGGVEIEQLAVERPEALARVAVDPLVGIDAAKAAEIVAAAGFADDVA--GAVADVIQKLWTVYDAEDATLVEVNPLVRTTDGRVIALDGKVTLDDNAEFRHPEH 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC2_STRCO (Succinyl-CoA ligase [ADP-forming] subunit beta-2 OS=Streptomyces coelicolor GN=sucC2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.129e-26
Identity = 74/240 (30.83%), Postives = 123/240 (51.25%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRY 739
            ++++E+Q  EL  ++GI VP+     S +  ++  + +       VVK+Q+  GGRG         GGV +     E E+ A  +LG  +       +G  V  V L E   +  E Y + +LDR + G + I  ++GGT IE++A + P  + ++P+D   G+    A ++ D  GL P+  D       + +L+K+    D  L+E+NPL  T+  ++VA D K+  DDNA FRQ R+
Sbjct:    1 MDLYEHQARELFKEHGIVVPRAEVTDSPERAREIARAL---GGRAVVKAQVKTGGRGKA-------GGVRLAADPAEAEEAARHILGMDI-------RGHTVDTVMLAEPCEIEREFYVSYVLDRASGGFLAIASAEGGTEIEEVAARRPEAVARIPVDPATGVHTATAVRIADAAGLPPQTVD------TLVRLWKVLVREDALLVEVNPLVRTAEGRIVALDGKVTLDDNARFRQSRW 217          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_YERPP1.630e-2633.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPN1.630e-2633.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPG1.630e-2633.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPE1.630e-2633.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPB1.630e-2633.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPA1.630e-2633.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERP31.630e-2633.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALMA1.630e-2634.87Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BEUC12.129e-2631.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC2_STRCO2.129e-2630.83Succinyl-CoA ligase [ADP-forming] subunit beta-2 O... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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