FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PYRIL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=sucC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.245e-25
Identity = 66/236 (27.97%), Postives = 122/236 (51.69%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + +HEY+  EL  +YG+ +P G    + DEV+K  +++      +V+K+Q++  GRG         GG+ I +  EE  +L+ KM G  +       +G +V K+Y+ + + +  EMY ++++DR +   + +    GG  IE++A+  P  I KV +D   G+ D     ++   G  P           ++ +Y++  + D  L+E NPLA +   +++  DA++  DDNA F+
Sbjct:    1 MKLHEYEAKELFLRYGVKIPPGKLALTPDEVRKIAEEI---GTPVVLKAQVVVAGRGKA-------GGIKIAQTPEEAYELSKKMFGMNI-------KGLVVRKLYVTKYVEVEREMYLSLIIDRASRRYLFLASPIGGVDIEEIAKTSPEKIKKVYVDPSIGLRDYHIRSIISWLGFKPGSQQWQQTASVIQAMYRIMVDYDAELVETNPLALSKEGEVIPLDARVIVDDNALFK 219          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HALSA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halobacterium salinarium GN=sucC PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.850e-25
Identity = 74/239 (30.96%), Postives = 119/239 (49.79%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRY 739
            + +HEYQ  E+ A  GI  P+     SVDE  +    + +P    + VK+Q+  GGRG         GG+ + +   E  + A  +LG  L       +G  V +V + E +   NE+Y  + +DR    P+++   +GG  IE +AE+ P  IV+  +D   G+    A   V     +     D  + V+ +Y L+ +SD T +EINP+  TS + +VAADA +  D++A FRQ  +
Sbjct:    1 MKLHEYQAKEVFADAGIPTPESALATSVDEAVEVADALDYP----VAVKAQVHVGGRGKA-------GGIKLAENTAEAREAAESILGMDL-------KGYTVDRVLVEEAVDFTNELYVGVTMDRSEGAPVVMVSERGGVDIESVAEEAPEDIVREHVDPSFGLQAYQARNAVYDAGIEQDVAGDVAKIVQGVYDLWADSDATEVEINPVMVTSERDVVAADAVMKLDEDALFRQPAF 221          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HALS3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=sucC PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.850e-25
Identity = 74/239 (30.96%), Postives = 119/239 (49.79%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRY 739
            + +HEYQ  E+ A  GI  P+     SVDE  +    + +P    + VK+Q+  GGRG         GG+ + +   E  + A  +LG  L       +G  V +V + E +   NE+Y  + +DR    P+++   +GG  IE +AE+ P  IV+  +D   G+    A   V     +     D  + V+ +Y L+ +SD T +EINP+  TS + +VAADA +  D++A FRQ  +
Sbjct:    1 MKLHEYQAKEVFADAGIPTPESALATSVDEAVEVADALDYP----VAVKAQVHVGGRGKA-------GGIKLAENTAEAREAAESILGMDL-------KGYTVDRVLVEEAVDFTNELYVGVTMDRSEGAPVVMVSERGGVDIESVAEEAPEDIVREHVDPSFGLQAYQARNAVYDAGIEQDVAGDVAKIVQGVYDLWADSDATEVEINPVMVTSERDVVAADAVMKLDEDALFRQPAF 221          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACIC1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=sucC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.946e-25
Identity = 70/234 (29.91%), Postives = 120/234 (51.28%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGK-MLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +++ EYQ  EL A +G+ +  G    + D+     + +      +VVK+Q+  GGRG         GGV +    +    A + +LG  +       +G  V +V +   + + +E Y A ++DR     + +G ++GG  IE +A + P  IV+VPID   G+    AA++ D +    A R++A+  ++ L++ F   D +L+E+NPL  T   +L+A D K+  DDNA FR
Sbjct:    1 MDLFEYQAKELFAAHGVPITPGEVAENPDQAADIARRL---GGRVVVKAQVKTGGRGKA-------GGVKLADDADAAAAAAEAILGMEI-------RGHRVHRVLVTTAVDIAHEYYVAFLVDRSRRSFLAMGSAEGGVEIEQVAAENPQAIVRVPIDATEGVDATLAARIADDIGFPAAVRDEAVRILRGLWEAFQAEDASLVEVNPLVRTLDDRLIALDGKVTLDDNADFR 217          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_THETH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Thermus thermophilus GN=sucC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.168e-24
Identity = 75/234 (32.05%), Postives = 121/234 (51.71%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  E++A+YG+ VP G    + +E K+  ++     K +V+K+Q+  GGRG         GGV +    +E  + A  +LG  +       +G  V KV + E + +  E Y  ++LDR     +++   +GG  IE++A + P  I K  ID   G    +A ++V   A    + N   + +  LY+ +   D ++ EINPL  T+   +VAADAK+  DDNA FR
Sbjct:    1 MNLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEF---GKRVVIKAQVHVGGRGKA-------GGVKLADTPQEAYEKAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKR-AGLEGNLNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFR 216          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CHLPN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia pneumoniae GN=sucC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 73/238 (30.67%), Postives = 119/238 (50.00%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDE----VKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEE-VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +++HEYQ  +L+A Y + +P    V+S +E    + K+  D        VVK Q+ AGGRG         GGV + K    +     K+LG    + QT      V KV +   +++  E Y A+++DRK   P+++    GG  IE++A   P  I+ +P+  +  I      +    +  +    +  ++ +KKL K F E+D +LLEINPL  T   +L+  D+K+  DDNA +R
Sbjct:    1 MHLHEYQAKDLLASYDVPIPPYWVVSSEEEGELLITKSGLD------SAVVKVQVHAGGRGK-------HGGVIVAKSSAGILQAVAKLLGMHFTSNQTADGFLPVEKVLISPLVAIQREYYVAVIMDRKHRCPVLMLSKAGGMDIEEVAHSSPEQILTLPLTSYGHIYSYQLRQATKFMEWEGEVMHQGVQLIKKLAKCFYENDVSLLEINPLVLTLEGELLVLDSKITIDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CHLMU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia muridarum GN=sucC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 75/236 (31.78%), Postives = 122/236 (51.69%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA--PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +++HEYQ  +L+  Y + +P      S+ E + A Q      +  VVK+Q+ AGGRG         GGV + +  E++     ++L     + QT      V+KV +   + +  E Y AI++DRK   P+I+    GG  IE++AEK P++++K+ +     I       +   +     VADR + I  ++KL + F ++D +LLEINPL  T    L+  DAK+  DDNA +R
Sbjct:    1 MHLHEYQAKDLLTSYQLPIPPYHVATSLSEAEVAIQA--EQWRSGVVKAQVHAGGRGKN-------GGVIVARSPEDLLAATDRLLHMQFSSNQTAGLSLPVNKVLISPLVEIALEYYIAIVIDRKHRCPVIMLSKSGGIDIEEIAEKQPDLLLKIALPSSGKIYAYQLRHIAKFMEWDKLVADRGNHI--IRKLLQCFYDNDASLLEINPLVLTKDGDLIILDAKITIDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CORGL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Corynebacterium glutamicum GN=sucC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 71/236 (30.08%), Postives = 125/236 (52.97%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +++ EYQ  +L   +G+ V KG+  ++ +  +KA +++       VVK+Q+  GGRG         GGV +     +  D A  +LG  +       +G  V++V + +   +  E YF+I+LDR     + +   +GG  IE LA++ P  + KV +D   GI ++ A ++V   G   +VA++   I  + K+++++ E + TL+E+NPL  T    ++A D K+  DDNA FR
Sbjct:    1 MDLFEYQARDLFETHGVPVLKGIVASTPEAARKAAEEI---GGLTVVKAQVKVGGRGKA-------GGVRVAPTSAQAFDAADAILGMDI-------KGHTVNQVMVAQGADIAEEYYFSILLDRANRSYLAMCSVEGGMEIEILAKEKPEALAKVEVDPLTGIDEDKAREIVTAAGFETEVAEK--VIPVLIKIWQVYYEEEATLVEVNPLVLTDDGDVIALDGKITLDDNADFR 217          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_METTH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Methanobacterium thermoautotrophicum GN=sucC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.400e-24
Identity = 73/242 (30.17%), Postives = 125/242 (51.65%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVK----KLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +  +EY   E+    GI+ P+G    + +E ++   ++  D   + VKSQ+L GGRG         GG+       V ++ G +L   +       +G+ V KV + EK+ +  E+Y + ++DR    P+I+  ++GG  IE+LA + P  IV+  I+  +     +A ++    A K+   ++ I  V     KLY+LF + D  L EINPL   SG  ++AADAKL  DD++ +R + ++
Sbjct:    1 MKFYEYSAKEIFRAEGISTPRGGVAETPEEAERIAAELGCD---VAVKSQVLTGGRGKA-------GGIRFASPSGVAEVTGDLLSSEV-------RGETVEKVLIEEKIPIDRELYVSAVIDRTAKMPLIMASAEGGVDIEELAARSPEKIVRYHINPLDEFLPYEAREI----ARKMGLESELIPSVGGVIWKLYQLFRKYDARLAEINPLV-ISGDSVIAADAKLEVDDDSIYRHREFM 220          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SALTO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=sucC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.440e-24
Identity = 77/236 (32.63%), Postives = 121/236 (51.27%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            ++++EYQG +L  ++G+ V  G    + +E +   + +      +VVK+Q+  GGRG         GGV + +  EE    A  +LG  +       +G  V KV +     +  E YF+ +LDR     + I    GG  IE +A + P  +VK PID   G+    A ++V   G   +VAD+   +E    L+K F   D TL+E+NPLA+T+   L+  DAK++ D+NAAFR
Sbjct:    1 MDLYEYQGRDLFERHGLPVLAGGVATTPEEARAIAERL---GGRVVVKAQVKVGGRGKA-------GGVKLTEGAEETVARATDILGMDI-------KGHTVHKVMITVTADVAEEYYFSYLLDRANRTFLCIASVAGGMDIEQVAAETPEKVVKEPIDANTGVDVATARRIVTQAGFPAEVADQT--VEIAVDLWKAFVAEDATLVEVNPLAKTAEGGLLLLDAKVSLDENAAFR 217          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_PYRIL5.245e-2527.97Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALSA6.850e-2530.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALS36.850e-2530.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIC18.946e-2529.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_THETH1.168e-2432.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLPN1.526e-2430.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLMU1.526e-2431.78Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CORGL1.993e-2430.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_METTH3.400e-2430.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SALTO4.440e-2432.63Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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