FC875593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RUBXD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=sucC PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24 Identity = 68/238 (28.57%), Postives = 131/238 (55.04%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV--VDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733 ++++E+QG EL+ ++G+ G+ + +E ++A + + + VK+Q+L GGRG GG+ + + EE E+ A ++LG + +G V ++ + + E+Y + M+DR++ P+I+ ++GG IE++AE+ P IV++ +D G+ ++ GL+ + A D V+ LY+ F D +L+EINPL T ++VA DAK+ D+++ +R + Sbjct: 1 MDLYEHQGKELLGRFGLRTLPGVVATTPEEARRAAERL---GGTVAVKAQVLTGGRGKA-------GGIKVAESPEEAEEAARRILGMDI-------RGHTVRRLLIESGADIERELYLSAMVDRESRRPLILFSTEGGVDIEEVAERSPGSIVRLHVDPLVGLLPYQVRELTFASGLSGETA--KDFGRAVQNLYEAFRGIDASLVEINPLVVTGEGEVVALDAKVTVDNSSLYRHQ 219
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_MYCVP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=sucC PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24 Identity = 73/242 (30.17%), Postives = 122/242 (50.41%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG--LAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748 +++ EYQ EL AK+ + G S ++ K +++ K ++VK+Q+ GGRG K+G G + E+ A +LG + +G IV K+ + E + E Y + +LDR + + +GG IE++A P + KVP+D G+ + A ++ + L +V D A + KL+++F + D TL+E+NPL T Q++A D K+ D NA FRQ + F Sbjct: 1 MDLFEYQAKELFAKHNVPTTPGRVTESAEDAKAIAEEI---GKPVMVKAQVKVGGRG----KAG--GVKYAATPEDALTHAQNILGLDI-------KGHIVKKLLVAEASDIAEEYYISFLLDRANRTYLAMCSVEGGMEIEEVAATKPERLAKVPVDAVKGVDEAFAREIAEKGHLPAEVLDA--AAVTIAKLWEVFVKEDATLVEVNPLVRTPDDQILALDGKVTLDANADFRQPGHAEF 224
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ARTS2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter sp. (strain FB24) GN=sucC PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24 Identity = 71/240 (29.58%), Postives = 120/240 (50.00%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLL 745 +++ EYQ ++ +G+ V G+ + +E K A + + VVK+Q+ GGRG GGV + K +E + + +LG + +G V+KV + + + E YF+++LDR + + +GG IE LA + P+ + KV ID GI A ++V R + + KL+ +F + D TL+E+NPL +T +VA D K+ D+NA FR ++ L Sbjct: 1 MDLFEYQARDMFEAHGVPVLAGIVAHTPEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTADEALEHSTNILGMDI-------KGHTVNKVMIAQGADIAEEYYFSVLLDRANRNYLAMCSVEGGMEIEQLAVERPDALAKVAIDPAVGIDQAKADEIVAAAGFAEELRGKVADVILKLWDVFKKEDATLVEVNPLVKTGAGDIVALDGKVTLDENADFRHAKHAL 223
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BACFR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacteroides fragilis GN=sucC PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24 Identity = 74/234 (31.62%), Postives = 114/234 (48.72%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + +HEYQ E+ + YGI V + + D A + + + +K+Q+L GGRG GGV + + +V A +L + +G V+K+ L E +++ E Y + +DR T +I + GG IE++A + P I++ ID G+ D A K L + N ++ LYK F E D +L EINPL T L+A DAK+ FDDNA +R Sbjct: 1 MKVHEYQAKEIFSTYGIPVERHALCHTADGAVAAYHRMGVNR--VAIKAQVLTGGRGKA-------GGVKLANNDRDVYQYAQTILEMTI-------KGYPVTKILLSEAVNIAAEYYISFTIDRNTRSVTLIMSAAGGMDIEEVARQSPEKIIRCSIDPLIGVPDYLAHKFAFSLFEQAEQANRMATIIQDLYKAFIEKDASLAEINPLVLTPVGTLLAIDAKMVFDDNALYR 218
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BACFN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=sucC PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24 Identity = 74/234 (31.62%), Postives = 114/234 (48.72%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + +HEYQ E+ + YGI V + + D A + + + +K+Q+L GGRG GGV + + +V A +L + +G V+K+ L E +++ E Y + +DR T +I + GG IE++A + P I++ ID G+ D A K L + N ++ LYK F E D +L EINPL T L+A DAK+ FDDNA +R Sbjct: 1 MKVHEYQAKEIFSTYGIPVERHALCHTADGAVAAYHRMGVNR--VAIKAQVLTGGRGKA-------GGVKLANNDRDVYQYAQTILEMTI-------KGYPVTKILLSEAVNIAAEYYISFTIDRNTRSVTLIMSAAGGMDIEEVARQSPEKIIRCSIDPLIGVPDYLAHKFAFSLFEQAEQANRMATIIQDLYKAFIEKDASLAEINPLVLTPVGTLLAIDAKMVFDDNALYR 218
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HERA2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=sucC PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.891e-24 Identity = 73/235 (31.06%), Postives = 118/235 (50.21%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGK-MLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK-LYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + +HEYQ +++A+YGI V G A+ +EV+K + + + VK+Q+ GGRG GG+ + AGK +LG + +G V KV + E ++ E+Y ++LDR T ++I S+GG IE++A+ P+ I+K+ D G+ A ++ + A + + LY+ F E+D L EINPL QL A D+K+ DD+ FR Sbjct: 1 MKLHEYQARDIVARYGIPVTGGGVAATAEEVQKVAEQI---GGPVAVKAQVHVGGRGKA-------GGIKLANTPAEAFDAGKAILGMDI-------KGLTVEKVLVAEAITFEKEIYLGVILDRATKRVVLIASSEGGVEIEEVAKINPDAIIKLAADPLLGLQPYQAQELAYSIGITDAKQARQFSSIATGLYRAFVENDAELAEINPLVVLPNGQLQALDSKIVLDDSGLFR 218
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ARTCA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=sucC PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.891e-24 Identity = 69/238 (28.99%), Postives = 119/238 (50.00%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRY 739 +++ EYQ ++ +G+ V G+ + +E K A + + VVK+Q+ GGRG GGV + K +E + + +LG + +G V+KV + + + E YF+++LDR + + +GG IE LA + P + K+ ID GI A ++V R + + KL+ +F + D TL+E+NPL +T +VA D K++ D+NA FR ++ Sbjct: 1 MDLFEYQARDMFEAHGVPVLAGIVAYTPEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKSADEALEHSTNILGMDI-------KGHTVNKVMIAQGADIAEEYYFSVLLDRANRNYLAMCSVEGGMEIEQLAVERPEALAKIAIDPAVGIDQAKADEIVAAAGFAEELRGKVADVILKLWDVFKKEDATLVEVNPLVKTGAGDIVALDGKVSLDENAEFRHAKH 221
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ARTAT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter aurescens (strain TC1) GN=sucC PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.891e-24 Identity = 70/234 (29.91%), Postives = 117/234 (50.00%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +++ EYQ ++ +G+ V G+ + +E K A + + VVK+Q+ GGRG GGV + K EE + + +LG + +G V+KV + + + E YF+++LDR + + +GG IE LA + P + K+ ID GI A ++V R + + KL+ +F + D TL+E+NPL T ++VA D K++ D+NA FR Sbjct: 1 MDLFEYQARDMFEAHGVPVLAGIVAHTPEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTAEEALEHSTNILGMDI-------KGHTVNKVMIAQGADIAEEFYFSVLLDRANRNYLAMCSVEGGMEIEQLAVERPEALAKIAIDPAVGIDQAKADEIVAAAGFAEELRGKVADVILKLWDVFKKEDATLVEVNPLVRTGAGEIVALDGKVSLDENADFR 217
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HALLT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=sucC PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.292e-23 Identity = 70/235 (29.79%), Postives = 122/235 (51.91%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + +HE+Q + A GI VP +VDE A ++ +P +K+Q+ GGRG GG+ I ++E E A ++LG L +G V ++ + + + V+E+Y + +DR P+++ ++GG +IE++AE+ P+ I + +D G+ A KVV D + LY L+ E+D + +E+NP+ TS + ++AADA +N D++A FR Sbjct: 1 MKLHEHQAKTIFADAGIPVPDSRLATTVDEALDAVDEIGYP----AAIKAQVHVGGRGKA-------GGIKIATDRDEAEQYAEEILGMDL-------KGYTVDQILVEQGVDFVDELYVGVTMDRGEGQPVLMVSTEGGVNIEEVAEENPDAIAREHVDPAFGLHPYQARKVVYEAGVDADVALDVASILTTLYDLYEENDASEIEVNPVMITSDRDVIAADAVMNIDEDALFR 217
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SALAI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salinispora arenicola (strain CNS-205) GN=sucC PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.687e-23 Identity = 75/236 (31.78%), Postives = 119/236 (50.42%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 ++++EYQG +L ++G+ V G + +E + + + +VVK+Q+ GGRG GGV + + +E A +LG + +G V KV + + E YF+ +LDR + I GG IE +A + P +VK PID G+ A +++ G +V D+ A+E L+K F D TL+E+NPLA T L+ DAK++ D+NAAFR Sbjct: 1 MDLYEYQGRDLFERHGLPVLAGGVATTPEEARAIAERL---GGRVVVKAQVKVGGRGKA-------GGVKLAEGADETVARATDILGMDI-------KGHTVHKVMITVTADVAEEYYFSYLLDRANRTFLCIASVAGGMDIEQVAAETPEKVVKAPIDANTGVDAAMARQIITRAGFPAEVVDQ--AVEVAVDLWKAFVAEDATLVEVNPLARTGQGGLLLLDAKVSLDENAAFR 217 The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bpback to top |