FC875593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_LEPBA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=sucC PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.136e-38 Identity = 87/234 (37.18%), Postives = 132/234 (56.41%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + +HEYQ E++ ++ NVP G + +V + +KA +V +VVK+QI AGGRG G GGV + K K++ + A K+LG L+T QTGP+GK V KVYL + L + E Y +I+LDR II+ ++GG IE++AE +P I+K+ ID GI ++ L + V +Y + + D LLEINPL T +++A D K++ D+NA +R Sbjct: 1 MKVHEYQAKEILRRHNANVPFGKVIDAVGDFEKAYNEVVQKSPVVVVKAQIHAGGRGKG-------GGVKVAKTKDDAKAAAEKILGMQLITPQTGPEGKKVLKVYLEQGLEIAKEYYLSILLDRAIRKTIIMASTEGGMEIEEVAETHPEKIIKIQIDPGIGIQGSQVRELAFALGIPTEAQKSFTALVNSVYNAYIKEDAALLEINPLILTKQNEIIAGDCKMDLDENALYR 227
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PELUB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pelagibacter ubique GN=sucC PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 5.402e-38 Identity = 86/234 (36.75%), Postives = 141/234 (60.26%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHE+Q +++ KYG VP+G+ +VDE+ + + + + + V+K+QI AGGRG GGV I+ +E+ A ++LG+ LVT QTGP G+ V ++Y+ E ++ E Y + ++DR ++ + I +GG IE++AEK P I+ ID+ + I+D D K++ A + AI +K +YK+F +D ++E+NPL T K+++ DAK+NFD NA FR Sbjct: 1 MNIHEHQAKQILKKYGAVVPEGVFAFTVDELIEKAKSLKTE--KFVLKAQIHAGGRGKA-------GGVKILNTIDELSVAAKELLGKTLVTHQTGPAGREVKRLYVEESSNIDKEFYLSCLVDRASSKIVFISSDQGGMDIEEVAEKTPEKIITTKIDITDEISDADCEKIIAIYALADDAKKQAIALIKSVYKMFLGTDANMVEVNPLILTKEKKIICLDAKVNFDSNALFR 225
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SPHWW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=sucC PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.056e-38 Identity = 94/237 (39.66%), Postives = 137/237 (57.81%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ EL+AK+G+ VP G A +VDE +A + + VVK+QI AGGRG G FK + KGGV + K +EV+ A MLG LVT QTG GK V+++Y+ + + +E Y ++++DRKT +I ++GG IE +A P I + ID G V L K A++ ++LY F +D ++LE+NPL ET+ +L+ DAK++FD NA +R Sbjct: 1 MNIHEYQAKELLAKFGVAVPAGHAALTVDEAVEAAKKL--PGPIWVVKAQIHAGGRGKGKFKELPADAKGGVRLSKSIDEVKANAADMLGNTLVTIQTGEAGKQVNRLYVTDGADIKSEYYLSMLVDRKTGRIAMIVSTEGGMDIEQVAHDTPEKIRTIVIDPAEGFQPHHGRAVAFALKLKGDLNKQAVKLAEQLYNAFIATDMSMLEVNPLVETTDGKLLVLDAKVSFDSNALYR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BACSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus clausii (strain KSM-K16) GN=sucC PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.056e-38 Identity = 91/239 (38.08%), Postives = 136/239 (56.90%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742 +NIHEYQG E++ YG+ VP G SVDE +A +++ VVK+QI AGGRG GGV + K +EV A ++LG+ LVT QTGP GK V ++ + E + +E Y +++DR T+ +++ +GGT IE++AEK P I K ID G+ A ++ + A++ + LY++F + D ++ EINPL T +++A DAK NFD NA +R K L Sbjct: 1 MNIHEYQGKEILRSYGVAVPNGKVAFSVDEAVEAAKEL--GSSVSVVKAQIHAGGRGKA-------GGVKVAKNLDEVRTYAEEILGKTLVTHQTGPAGKEVKRLLIEEGCDIKSEYYIGLVVDRATSSVVLMASEEGGTEIEEVAEKTPEKIFKEVIDPAVGLQGFQARRIAFNINIPKELVGQAVKFMMGLYQVFVDKDASIAEINPLVTTGDGKVMALDAKFNFDSNALYRHKDIL 230
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BACCR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sucC PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.056e-38 Identity = 92/239 (38.49%), Postives = 135/239 (56.49%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742 +NIHEYQG ++ YG++VP G +V+E +A +++ D V K+QI AGGRG GGV + K +EV A +LG LVT QTGP+GK V ++ + E + E Y ++LDR T+ +++ +GGT IE++AEK P I K ID G+ A ++ + A++ + LY+ F E DC++ EINPL T +++A DAKLNFD NA +R K L Sbjct: 1 MNIHEYQGKAVLRSYGVSVPNGKVAFTVEEAVEAAKELGTD--VCVEKAQIHAGGRGKA-------GGVKVAKNLDEVRTYAESILGTTLVTHQTGPEGKEVKRLLIEEGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNINIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGEGKVMALDAKLNFDSNALYRHKDIL 230
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ANAMM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Anaplasma marginale (strain St. Maries) GN=sucC PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.056e-38 Identity = 91/236 (38.56%), Postives = 140/236 (59.32%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +N+HE+Q +++ +G+ VP+G+ V SV+EV + D+ P + VK+QI AGGRG GGV I K K+EV+ L +ML +L+T QT P+G+ V+KVYL E + + E Y + ++DR II S+GG IE +A++ PNM+ V +D G ++ GL PK + + +K+YK+ E+D + +EINP+AETS + +A DAK+ FDDN +R Sbjct: 1 MNVHEFQAKGVLSSFGVTVPRGVVVESVEEVDRLLGDLAPGL--VAVKAQIHAGGRGKA-------GGVKIGKTKDEVKSLVKQMLHSVLITHQTSPEGQKVNKVYLEEGVDIGKEYYISAVVDRSVGRVSIIFSSEGGVDIETVAKERPNMVSVVHVDPLYGFRSFHGQELCRRFGLGPKQV--SGVVSMARKIYKVLVETDASQVEINPMAETSSGEFLALDAKIAFDDNGLYR 225
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_WOLPM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Wolbachia pipientis wMel GN=sucC PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.215e-38 Identity = 97/236 (41.10%), Postives = 134/236 (56.78%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ E+ K+ + VPKG S +EVK + D VVK+QI AGGRG GGV + K EE + M+G LVT QTGP G+ V KVY+ E S+ E Y ++++D K + PI I S+GG IE++A+ P IVK ID T D++K+ L+P+ ++ I KK+Y F +D + +EINPL ET+ +A DAK+NFDDNA +R Sbjct: 1 MNIHEYQAKEVFHKFNVPVPKGFVATSAEEVKTQVSQLKSD--VFVVKAQIHAGGRGKA-------GGVKLAKSVEEAQQFVKDMIGMTLVTHQTGPSGQQVRKVYVEEGSSIKKEYYLSLVIDPKLSRPIFIFSSEGGMDIEEVAKNSPAKIVKFDID---PATSFDSSKLSSRFHLSPEQIEKISNI--AKKIYDAFIATDASQIEINPLVETNSGDFIALDAKINFDDNALYR 222
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RALEH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sucC PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.215e-38 Identity = 94/245 (38.37%), Postives = 143/245 (58.37%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748 +NIHEYQG E++ KY + VP+G+ SVDE KA + + VVK+QI AGGRG G GGV + K ++V+ A +LG LVT QTGP+GK V+++ + E + E+Y ++++DR + ++ S+GG IE++A P I + I+ G+TD +A D +A K+ + ++ Q ++ LYK F E+D +L EINPL T +++A DAK NFD NA FR + + Sbjct: 1 MNIHEYQGKEILRKYNVPVPRGIPAFSVDEALKAAETL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIDDVKTYASNILGMQLVTHQTGPEGKKVNRLLIEEGADIKKELYVSLVVDRVSQKVALMASSEGGMDIEEVAAHSPEKIHTLIIEPSVGLTDAEA----DDIARKIGVPDTSVAQARQALQGLYKAFYETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAY 232
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SORC5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sorangium cellulosum (strain So ce56) GN=sucC PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.204e-37 Identity = 96/239 (40.17%), Postives = 133/239 (55.65%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPD--HKELVVKSQILAGGRGLGTFKSGLKGGVHIVK--KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAK--VVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + IHEYQG +L A+YG+ VPKG EV + + +VVK+QI AGGRG G GGV + K E LA K+LG LVTKQTGP+G+ V ++Y+ + L + E+YFA+++DR+ +I ++GG IE++A P I K+ ID G+ + + GL K R ++ V LY F DC+LLEINPL T + A DAK++FDDNA FR Sbjct: 1 MKIHEYQGKQLFARYGVPVPKGEPAFQASEVAPIADRLIAQTGNPVVVVKAQIHAGGRGKG-------GGVKVAKGGSAEATALAEKILGMQLVTKQTGPEGQKVRRLYIEQGLDIARELYFAMLVDRERRRIAVIASTEGGMDIEEVAHSTPEKIYKLFIDPVLGLAPYQGRQLAIALGLTAKETQR-QFLKLVASLYACFTAEDCSLLEINPLVVTGAGDVFALDAKVSFDDNAEFR 231
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BDEBA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bdellovibrio bacteriovorus GN=sucC PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.204e-37 Identity = 90/234 (38.46%), Postives = 133/234 (56.84%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ E++ K+G+ KG S +E A +++ VVK+QI AGGRG G GGV + K +EV + KM+G LVT QTGP+GK+V KV++ + ++ E Y A ++DR T ++ S+GG IE++AE P+ I KV ID G+ A ++ + + A N A++ LY F +DC++ EINPL T ++ DAK+NFD N+ FR Sbjct: 1 MNIHEYQAKEVLRKFGVATLKGKLAHSPEEAVAAAKEI--GGSVWVVKAQIHAGGRGKG-------GGVKVAKSLDEVSEFTKKMIGMTLVTHQTGPEGKVVQKVFIEQGCNIAKEYYVACLIDRATGRAAMMASSEGGMDIEEVAEHNPDAIKKVDIDPTVGLMPFQARELAFQIGMEPAIVNKAVKFFAGLYNAFVATDCSIAEINPLVVTKEGDVLCLDAKMNFDSNSLFR 225 The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bpback to top |