FC875593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BORA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella avium (strain 197N) GN=sucC PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 5.772e-40 Identity = 93/241 (38.59%), Postives = 138/241 (57.26%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748 + IHEYQG EL+ ++G+ VP+G+ SV+E A + + VVK+QI AGGRG G GGV + + +EV LA ++LG LVT QTG QG+ V+++Y+ + + E Y +++ DR T +I S+GG IE++A P I+ ID G+TD A KV D + A++ KKLY+ + ++D +L+EINPL S ++A DAK NFD NA FR + + Sbjct: 1 MKIHEYQGKELLKQFGVPVPRGIPAFSVEEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLARSLDEVRQLASQILGMQLVTHQTGAQGQKVNRLYIEDGADIQKEYYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEYIDPIVGLTDAQAKKVADAIGMPADSTAQAVDVFKKLYQCYMDTDASLVEINPLNRDSKGNIIALDAKFNFDSNALFRHPEIVAY 232
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHOSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=sucC PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.538e-40 Identity = 96/238 (40.34%), Postives = 135/238 (56.72%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730 +NIHEYQ L+ YG V G V DE K A ++ VVK+QI AGGRG G FK +G KGGV + K E +LA +MLG+ LVT QTGP GK V+++Y+ E + E+Y A+++DR T+ + ++GG IE++A P IV +D +G++D +V L + A ++ VK LY+ F E D +LEINPL + L DAK+ FD+NA +RQ Sbjct: 1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPAGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLEGAQVKQCVQLVKNLYRAFVEKDMEMLEINPLIVMTDGNLKVLDAKVGFDNNALYRQ 236
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=sucC PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.538e-40 Identity = 96/238 (40.34%), Postives = 135/238 (56.72%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730 +NIHEYQ L+ YG V G V DE K A ++ VVK+QI AGGRG G FK +G KGGV + K E +LA +MLG+ LVT QTGP GK V+++Y+ E + E+Y A+++DR T+ + ++GG IE++A P IV +D +G++D +V L + A ++ VK LY+ F E D +LEINPL + L DAK+ FD+NA +RQ Sbjct: 1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPAGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLEGAQVKQCVQLVKNLYRAFVEKDMEMLEINPLIVMTDGNLKVLDAKVGFDNNALYRQ 236
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=sucC PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.538e-40 Identity = 96/238 (40.34%), Postives = 135/238 (56.72%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730 +NIHEYQ L+ YG V G V DE K A ++ VVK+QI AGGRG G FK +G KGGV + K E +LA +MLG+ LVT QTGP GK V+++Y+ E + E+Y A+++DR T+ + ++GG IE++A P IV +D +G++D +V L + A ++ VK LY+ F E D +LEINPL + L DAK+ FD+NA +RQ Sbjct: 1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPAGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLEGAQVKQCVQLVKNLYRAFVEKDMEMLEINPLIVMTDGNLKVLDAKVGFDNNALYRQ 236
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_JANMA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Janthinobacterium sp. (strain Marseille) GN=sucC PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.538e-40 Identity = 99/238 (41.60%), Postives = 137/238 (57.56%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQG E++ KYG+ PKG SVDE +A + + K VVK+QI AGGRG G GGV + K +EV A +LG LVT QTGP+G++V ++ + E + E+Y +++DR + ++ S+GG IE +AE P I KV ID G+ D +A D +A K+ +I Q + LYK F E+D +L EINPL T ++VA DAK NFD NA +R Sbjct: 1 MNIHEYQGKEILRKYGVTTPKGFPCFSVDEAVQAAEKL--GGKVWVVKAQIHAGGRGKG-------GGVKVAKSLDEVRKYANDILGMTLVTHQTGPEGRLVKRLLIEEGADIKKELYVGMVVDRGSQRVALMASSEGGMDIEHVAEHTPEKIHKVFIDPVKGLLDSEA----DDIARKIGVPEGSIGQARAFMQGLYKAFDETDASLAEINPLIVTGDDRIVALDAKFNFDSNAMYR 225
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_DECAR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Dechloromonas aromatica (strain RCB) GN=sucC PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.538e-40 Identity = 94/235 (40.00%), Postives = 135/235 (57.45%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730 + IHEYQG +++ K+G+ VP+G+ +V++ KA + + K VVK+QI AGGRG G GGV + E+V + AG++LG LVT QTGP+G+ V + + E + +E Y A + DR T I+ +GG IE++A K P IVKV ++ G+TDE A + G+ A IE +K LY + E+D +L EINPL + A DAK NFD NA +RQ Sbjct: 1 MKIHEYQGKQILKKFGVTVPRGIHCTTVEDAVKAAETL--GGKVWVVKAQIHAGGRGKG-------GGVKVATSLEKVREYAGQILGMQLVTHQTGPEGQKVRHLLIEEGADIKHEYYVAALTDRATQSVAIMASYEGGMDIEEVAHKTPEKIVKVFVNPLVGLTDEQALTLAKGMGMNEASIPQCIETLKSLYTCYMETDASLAEINPLIHEGDGTVKALDAKFNFDSNALYRQ 226
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BURPP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=sucC PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.538e-40 Identity = 90/241 (37.34%), Postives = 144/241 (59.75%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748 + IHEYQG E++ K+G+ VP+G V SVD+ KA +++ VVK+QI AGGRG G GGV + K ++V + + ++LG LVT QTGP+G+ V+++ + E + E+Y +++DR + +++ S+GG +E++AEK P +I K+ +D G+ D +A ++ + A A ++ LYK F E+D +L EINPL T +++A DAK NFD NA FR + + Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPVFSVDDAVKAAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLDQVREYSEQILGMQLVTHQTGPEGQKVNRLLIEEGADIKKELYVGLVIDRVSQKIVVMASSEGGMDVEEVAEKTPELIHKIAVDPATGLKDAEADELATKIGVPAASLPQARAILQGLYKAFWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAY 232
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ALKOO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=sucC PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.538e-40 Identity = 95/239 (39.75%), Postives = 136/239 (56.90%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742 +NIHEYQ EL+ YG+ VP+G + V + ++A + D VVK+QI AGGRG GGV I K EVE + ++LG+ LVT QTG +G++V + + E + E Y A LDR+ + +I +GG IE++A P+ I+K ID G+TD +V L + ND +E +K LY+ F E DC+LLEINPL T +++A DAK+NFD N +R + L Sbjct: 1 MNIHEYQAKELLRDYGVPVPRGQVIYDVRDAQRAAWHIESDIA--VVKAQIHAGGRGKA-------GGVKIAKSITEVEQFSRELLGKTLVTHQTGQEGRVVKAILIEEGCEIYKEYYIAFTLDRENSKIALIASEEGGMDIEEVAANRPDKILKEIIDPLIGLTDFQGRRVCFNLNIDGSLINDTVELMKNLYRCFIEKDCSLLEINPLVITKNNRVMALDAKINFDGNGLYRNEDVL 230
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ALKMQ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus metalliredigens (strain QYMF) GN=sucC PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.538e-40 Identity = 93/241 (38.59%), Postives = 142/241 (58.92%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748 +NIHEYQG E+M +YGI+VP+ +V+E +A D+ + + VK+QI AGGRG GGV I + EE + A +L +IL+TKQTGP+GK+V++V + E L + E Y + +D T+ ++IG +GG IE++AEK P+ I K ID G+ A ++ + A +A + + +Y+LF E DC+++EINPL T ++VA D K+ FDDN+ R L + Sbjct: 1 MNIHEYQGKEIMKQYGISVPRSRITFTVEEAVQAAIDL--GCEVIAVKAQIHAGGRGKA-------GGVKITRSLEETKSAAEAILDKILITKQTGPEGKVVNQVLIEEGLKIEKECYLSCAVDSTTSTVVLIGSPEGGMDIEEVAEKTPHKIFKESIDPAIGLQQYQARRLAFNMGINEACLQEAAQCIMNIYRLFMEKDCSMVEINPLITTEEHKVVALDCKVCFDDNSLCRHPEILKY 232
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BURCM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=sucC PE=3 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 9.845e-40 Identity = 96/245 (39.18%), Postives = 146/245 (59.59%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748 + IHEYQG E++ K+G+ VP+G SVDE K +++ VVK+QI AGGRG G GGV + K E+V + A ++LG LVT QTGP+G+ V+++ + E + E+Y ++++DR + +++G S+GG IE++AEK+P +I KV ++ G+ D A D LA K+ +I Q + LYK F E+D +L EINPL + +++A DAK NFD NA FR + + Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMIEEGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSGDGKVIALDAKFNFDSNALFRHPEIVAY 232 The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bpback to top |