FC875602

Overview
NameFC875602
Unique NameFC875602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN5_PIG (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 OS=Sus scrofa GN=B3GNT5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 54/183 (29.51%), Postives = 85/183 (46.45%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRS---GTVAVRFFVGLHKNQIVNGELWN----EARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVD---EVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            L + V +   N+ RR A+R TW     V+S     +   F +G   + ++   L      E   Y DI    FVD +YNL     L      +    AKF+M  DDD F+ +    E L SL+++ V    + G ++  + P R+  SK+Y+S + +    YP +  G  YV+S D+   VY+
Sbjct:   88 LLLFVKTAPENYNRRSAIRNTWGNEKYVQSQLNANIKTLFVLGTPSDPLMRERLQRRLVWEDHMYSDIIQQDFVDSFYNLTLKFLLQFKWANSFCPHAKFLMTADDDIFIHMPNLIEYLQSLEQMGVQDFWI-GRVHHGAPPVRDKSSKYYVSYDMYQWPAYPDYTAGAAYVISGDVATKVYE 269          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN2_MOUSE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 OS=Mus musculus GN=B3gnt2 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 57/201 (28.36%), Postives = 95/201 (47.26%), Query Frame = 3
Query:  147 RSYPLSLHKPVD------LFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWN----EARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSG--LLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKDTGR 710
            R+Y L + +P        L + + S   +F RR A+R +W + T V + TV   F +G    +  + +L +    E+  + DI +  + D ++NL   + L +    T    A+FV K DDD FV    +L  L  ++      L  G +   + PHR+ + K+YI  E +    YPP+A G G++ S  +   +Y  T R
Sbjct:  126 RNYSLLIDQPKKCAKKPFLLLAIKSLIPHFARRQAIRESWGRETNVGNQTVVRVFLLGKTPPEDNHPDLSDMLKFESDKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDAEFVFKGDDDVFVNTHHILNYLNSLSKSKAKDLFIGDVIHNAGPHRDKKLKYYIP-EVFYTGVYPPYAGGGGFLYSGPLALRLYSATSR 325          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN9_MOUSE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 OS=Mus musculus GN=B3gnt9 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 57/174 (32.76%), Postives = 81/174 (46.55%), Query Frame = 3
Query:  180 DLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGE---------LWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVS 671
            DL I V S A +F+RR AVR+TW     V+   V   F +G+ K     G          L  E+R Y DI L  F D +  +T K +    + +       FV K D D FV V  +L  L+  +    LL G +  ++RP R   SK++I    +    YP +A G G+V+S
Sbjct:  119 DLLIAVKSVAADFERREAVRQTWGAEGRVQGALVRRVFLLGVPKGAGSGGAGTRSHWRTLLEAESRAYADILLWAFEDTFFNLTLKEIHFLSWASAFCPDVHFVFKGDADVFVHVRNLLQFLELRDPAQDLLAGDVIVQARPIRARASKYFIPRAVYGLPVYPAYAGGGGFVLS 292          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN5_RAT (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 OS=Rattus norvegicus GN=B3gnt5 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 53/185 (28.65%), Postives = 91/185 (49.19%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRS---GTVAVRFFVG----LHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFG---TDVVSAKFVMKTDDDAFVRVD---EVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            L + + +   N++RR A+R+TW     V+S     + + F +G    L   ++    +W E + Y DI    F D ++ +T+K L    FG   T    A+F+M  DDD F+ +    E L  L+++ V    + G ++    P R+  SK+Y+  E +    YP +  G  YVVS+D+   +Y+
Sbjct:   89 LLLFIKTAPENYERRSAIRKTWGNENYVQSQLNANIKILFALGTPHPLKGKELQKRLIW-EDQVYHDIIQQDFTDSFHNLTFKFLLQ--FGWANTFCPHARFLMTADDDIFIHMPNLIEYLQGLEQVGVRDFWI-GHVHRGGPPVRDKSSKYYVPYEMYKWPAYPDYTAGAAYVVSNDVAAKIYE 269          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GTE_ARATH (Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 48/172 (27.91%), Postives = 84/172 (48.84%), Query Frame = 3
Query:  186 FIGVFSTANNFKRRMAVRRTWM-------QYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDI 680
            F+G+ +   +  RR ++R+TWM       +  E  +G +A+RF +G  K++    +L  E   Y D  L+   + Y+ + +KTLA       +  ++F +K DDD ++R D +   L +   HS    G +  +     +P+ KWY  L     + Y   A+GP Y +S D+
Sbjct:   89 FVGIQTGFGSAGRRRSLRKTWMPSDPEGLRRLEESTG-LAIRFMIGKTKSEEKMAQLRREIAEYDDFVLLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERSHSQTYLGCL-KKGPVFTDPKLKWYEPLSHLLGKEYFLHAYGPIYALSADV 258          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN9_HUMAN (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 OS=Homo sapiens GN=B3GNT9 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 62/202 (30.69%), Postives = 89/202 (44.06%), Query Frame = 3
Query:  147 RSYPLSLHKP------------VDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNG--ELWNEART------------YGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVS 671
            R +PL +++P             DL I V S A +F+RR AVR+TW     V+   V   F +G+ +     G  E+   ART            Y DI L  F D +  +T K +    + +      +FV K D D FV V  +L  L   +    LL G +   +RP R   SK+YI    +    YP +A G G+V+S
Sbjct:   94 RRFPLLINQPHKCRGDGAPGGRPDLLIAVKSVAEDFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRGAGSGGADEVGEGARTHWRALLRAESLAYADILLWAFDDTFFNLTLKEIHFLAWASAFCPDVRFVFKGDADVFVNVGNLLEFLAPRDPAQDLLAGDVIVHARPIRTRASKYYIPEAVYGLPAYPAYAGGGGFVLS 295          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN7_RAT (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 OS=Rattus norvegicus GN=B3gnt7 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 56/198 (28.28%), Postives = 87/198 (43.94%), Query Frame = 3
Query:  147 RSYPLSLHKP------VDLFIGVFSTANNFKRRMAVRRTWMQYTEVRS---GTVAVRFFVGLHKNQIVNGE----LWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV--SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVY 695
            R +P+ L+ P      V L + V S      RR  +R+TW    E      G V   F +G    Q         L  E R YGDI    F+D +  +T K +    +  D+   +  F+ K DDD FV    +L  L        L  G +   +RP R  ++K+YI    + + TYPP+A G G+++S  + + ++
Sbjct:  114 RYFPMLLNHPEKCAGDVYLLVVVKSVITQHDRREVIRQTWGHEWESAGPDRGAVRTLFLLGTASKQEERTHYQQLLAYEDRLYGDILQWDFLDSFFNLTLKEIHFLKW-LDIYCPNVPFIFKGDDDVFVNPTNLLEFLSDRQPQENLFVGDVLKHARPIRKKDNKYYIPAVMYSKATYPPYAGGGGFLMSGSLARQLH 310          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: BRN_DROME (Beta-1,3-galactosyltransferase brn OS=Drosophila melanogaster GN=brn PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 54/178 (30.34%), Postives = 88/178 (49.44%), Query Frame = 3
Query:  171 KPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVS-AKFVMKTDDDAFVRVDEVLTSLKR--INVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVY 695
            +P  L + + S   N +RR A+RRTW    E R   V +R    L   +    ++  E+R +GDI    F D Y   T KT+    + +D  + ++F +  DDD +V    VL  L R   +    LL+     ++ P R+  SKWY+SLEE+P + +PP+     +++S    + +Y
Sbjct:   76 QPARLTMLIKSAVGNSRRREAIRRTWGY--EGRFSDVHLRRVFLLGTAEDSEKDVAWESREHGDILQAEFTDAYFNNTLKTMLGMRWASDQFNRSEFYLFVDDDYYVSAKNVLKFLGRGRQSHQPELLFAGHVFQTSPLRHKFSKWYVSLEEYPFDRWPPYVTAGAFILSQKALRQLY 251          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN7_MOUSE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 OS=Mus musculus GN=B3gnt7 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 55/198 (27.78%), Postives = 87/198 (43.94%), Query Frame = 3
Query:  147 RSYPLSLHKP------VDLFIGVFSTANNFKRRMAVRRTWMQYTE---VRSGTVAVRFFVGLHKNQIVNGE----LWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV--SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVY 695
            R +P+ L+ P      V + + V S      RR  +R+TW    E   +  G V   F +G    Q         L  E R Y DI    F+D +  +T K +    +  D+   +  FV K DDD FV    +L  L        L  G +   +RP R  ++K+YI    + + TYPP+A G G+++S  + + ++
Sbjct:  114 RYFPMLLNHPEKCAGDVYMLVVVKSVITQHDRREVIRQTWGHEWESAGLGRGAVRTLFLLGTASKQEERTHYQQLLAYEDRLYADILQWDFLDSFFNLTLKEIHFLKW-LDIYCPNVPFVFKGDDDVFVNPTNLLEFLSDRQPQENLFVGDVLKHARPIRKKDNKYYIPAVMYGKATYPPYAGGGGFLMSGSLARQLH 310          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: BRE2_CAEEL (Beta-1,3-galactosyltransferase bre-2 OS=Caenorhabditis elegans GN=bre-2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 46/184 (25.00%), Postives = 89/184 (48.37%), Query Frame = 3
Query:  180 DLFIGVFSTANNFKRRMAVRRTWMQYTE---VRSGTVAVRFFVGLH-KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFG-TDVVSAKFVMKTDDDAFVRVDEV--LTSLKRINVHSGLLYG--LINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKDT 704
            ++ + V S  +NF RR  +R+TWM       +  G +   F VG++  ++ +N  +  EA+ +GD+ ++   D Y  +++KT+++ ++  +   S   + K D+D     D++  L + K IN  +  +YG       +  H    +KW IS   +    YP +  GP Y ++    K + + T
Sbjct:   87 EILMIVSSNCDNFARRNILRKTWMNPENSQIIGDGRMKALFLVGINGADEKLNAVVLEEAKVFGDMIVIDLEDNYLNLSYKTISLLLYSISKTKSPNLIGKIDEDVLFYPDQLTPLINDKTINTSTFSIYGEKYEAGVAVNHGEDNAKWQISKNSFKCSVYPSYLSGPTYFLTRKAAKRIVEAT 270          
The following BLAST results are available for this feature:
BLAST of FC875602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
B3GN5_PIG2.061e-1229.51UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GN2_MOUSE2.061e-1228.36UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GN9_MOUSE2.691e-1232.76UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GN5_RAT2.691e-1228.65UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GTE_ARATH3.515e-1227.91Probable beta-1,3-galactosyltransferase 14 OS=Arab... [more]
B3GN9_HUMAN3.515e-1230.69UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GN7_RAT1.023e-1128.28UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
BRN_DROME1.336e-1130.34Beta-1,3-galactosyltransferase brn OS=Drosophila m... [more]
B3GN7_MOUSE6.629e-1127.78UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
BRE2_CAEEL8.658e-1125.00Beta-1,3-galactosyltransferase bre-2 OS=Caenorhabd... [more]

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Properties
Property NameValue
Genbank descriptionC31405G04EF CTVClemen1 Citrus clementina cDNA clone C31405G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875602 ID=FC875602; Name=FC875602; organism=Citrus clementina; type=EST; length=711bp
ATACATCCTTCGCTTATCGCGAAACTTTGGAGCCATGGCTGGTTAATGAA
GTTAGGATTTCTGGAGACCTGAAATTAATTTCCGTCTTGGCCAGTGGTTT
ACCCACGTCCGAGGATTCAGAGCATACAACTGATTTAGAAGCACTAAGAT
CTTATCCTCTATCTCTTCATAAACCAGTGGATTTGTTCATTGGTGTTTTC
TCAACAGCAAATAATTTTAAGCGAAGAATGGCAGTTAGAAGGACATGGAT
GCAGTACACTGAAGTGCGGTCAGGAACAGTTGCAGTTCGCTTTTTTGTTG
GTTTGCATAAAAACCAGATAGTCAATGGGGAACTCTGGAATGAGGCACGA
ACGTATGGAGACATACAGCTGATGCCTTTTGTTGACTACTACAATCTCAT
CACCTGGAAAACTTTAGCGATCTGCATCTTTGGGACGGATGTTGTTTCAG
CAAAATTTGTCATGAAGACAGATGACGATGCATTTGTTCGTGTGGATGAA
GTGCTGACTTCTTTAAAGAGGATTAATGTGCATTCTGGGTTGCTTTATGG
ACTCATTAACTCTGAGTCTCGACCACATCGGAATCCTGAAAGCAAGTGGT
ACATTAGCCTTGAGGAATGGCCTGAAGAAACTTACCCCCCTTGGGCGCAT
GGTCCTGGTTATGTTGTGTCCCATGACATAGGAAAGGCAGTGTACAAAGA
TACAGGAAGGG
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