FC875604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16 Identity = 52/148 (35.14%), Postives = 81/148 (54.73%), Query Frame = 3 Query: 174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 V L +T++ L LF G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A + + ANL+I L + +K + D FS FG I+ N +++ D TG SRG FI +D ++ AI + NG Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16 Identity = 58/190 (30.53%), Postives = 98/190 (51.58%), Query Frame = 3 Query: 144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----------------KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665 +E + YVGNL +T L E+F +AG V NV + DRVT+ +G+ FV S E+A AI++ + ++ G+ ++VN S + +D L++ NL + + L D F+ + + K++ D +G SRGFGFI++ S EA ++A++ MN L R + ++ A +K Sbjct: 108 SESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFM-SAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15 Identity = 49/167 (29.34%), Postives = 89/167 (53.29%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL----------FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626 YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + ++ + L ++ ++ PD+ + + F AFG I + + R+P TG +GFGFI Y+ ++S A+ +MN GQYL Sbjct: 89 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKI-KSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYL 254
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15 Identity = 51/148 (34.46%), Postives = 81/148 (54.73%), Query Frame = 3 Query: 174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 V L +T++ L LF G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A +++ ANL+I L + +K + D F FG I+ N +++ D TG SRG FI +D ++ AI + NG Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIK-DANLYISGLPRTMTQKDVEDMFLPFGHII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15 Identity = 53/155 (34.19%), Postives = 78/155 (50.32%), Query Frame = 3 Query: 150 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614 R + V L +T+ L+ LF GP+ + +D T GY FV+F SE D+ AIKVLN I + K ++V+ A +S+ NL++ NL + + L F +G IV I+RD TG RG F+ Y+ E + AI A+N Sbjct: 121 RASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15 Identity = 57/186 (30.65%), Postives = 96/186 (51.61%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677 G++S + T + NL TEE L E+F +A + VP+++ +GY F+EF S EDA A+ N +++ G+ IR+ + S + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-QGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15 Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 3 Query: 120 ANLLGQHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614 AN ++ N T + N PQ + + L+ LF GP+ + +D T GYGFV+F SE DA AI LN I + K I+V+ A + L NL++ NL + ++ L F +G IV I+RD TG RG FI ++ E + AI A+N Sbjct: 63 ANSTNSLNSGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLR-DTNLYVTNLSRSITDEQLETIFGKYGQIV-QKNILRDKHTGTPRGVAFIRFNKREEAQEAISALN 226
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15 Identity = 58/181 (32.04%), Postives = 88/181 (48.62%), Query Frame = 3 Query: 87 GMTTRIAPGVGANLL----GQHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614 G +AP + N + G + + T + N PQ +T+ L+ LF GP+ + KD T GY FV+F SE DA AIK LN + + K ++V+ A +S+ NL++ NL + + L F +G IV I+RD TG RG F+ ++ E + AI A+N Sbjct: 55 GSMCNMAPAISTNSVNSGGGDCGDNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDELEKIFGKYGNIV-QKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 233
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15 Identity = 52/148 (35.14%), Postives = 80/148 (54.05%), Query Frame = 3 Query: 174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 V L +T+E L LF G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A + + ANL+I L + +K + D FS FG I+ N +++ D TG SRG FI +D ++ AI + G Sbjct: 24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM7_HUMAN (RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15 Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 3 Query: 141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 383 +A D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F+ E YA+ +LN IKLYG+PI++ Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAMNLLNGIKLYGRPIKI 82 The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 191
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bpback to top |