FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 52/148 (35.14%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            V  L   +T++ L  LF   G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    + +   ANL+I  L   + +K + D FS FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG
Sbjct:   24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 58/190 (30.53%), Postives = 98/190 (51.58%), Query Frame = 3
Query:  144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----------------KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            +E  +    YVGNL   +T   L E+F +AG V NV +  DRVT+  +G+ FV   S E+A  AI++ +  ++ G+ ++VN                  S  +  +D    L++ NL   +  + L D F+     + + K++ D  +G SRGFGFI++ S EA ++A++ MN   L  R + ++ A +K
Sbjct:  108 SESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFM-SAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 49/167 (29.34%), Postives = 89/167 (53.29%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL----------FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626
            YVG++  ++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V +     ++  +   L          ++ ++ PD+ +  +   F AFG I  +  + R+P TG  +GFGFI Y+  ++S  A+ +MN     GQYL
Sbjct:   89 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKI-KSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYL 254          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 51/148 (34.46%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            V  L   +T++ L  LF   G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    +++   ANL+I  L   + +K + D F  FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG
Sbjct:   24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIK-DANLYISGLPRTMTQKDVEDMFLPFGHII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 53/155 (34.19%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  150 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614
            R  +    V  L   +T+  L+ LF   GP+    + +D  T    GY FV+F SE D+  AIKVLN I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G IV    I+RD  TG  RG  F+ Y+  E +  AI A+N
Sbjct:  121 RASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 57/186 (30.65%), Postives = 96/186 (51.61%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677
            G++S    +  T  + NL    TEE L E+F +A     + VP+++     +GY F+EF S EDA  A+   N +++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-QGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  120 ANLLGQHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614
            AN     ++  N   T  + N  PQ + +  L+ LF   GP+    + +D  T    GYGFV+F SE DA  AI  LN I +  K I+V+ A    + L    NL++ NL   + ++ L   F  +G IV    I+RD  TG  RG  FI ++  E +  AI A+N
Sbjct:   63 ANSTNSLNSGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLR-DTNLYVTNLSRSITDEQLETIFGKYGQIV-QKNILRDKHTGTPRGVAFIRFNKREEAQEAISALN 226          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 58/181 (32.04%), Postives = 88/181 (48.62%), Query Frame = 3
Query:   87 GMTTRIAPGVGANLL----GQHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614
            G    +AP +  N +    G     +  + T  + N  PQ +T+  L+ LF   GP+    + KD  T    GY FV+F SE DA  AIK LN + +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G IV    I+RD  TG  RG  F+ ++  E +  AI A+N
Sbjct:   55 GSMCNMAPAISTNSVNSGGGDCGDNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDELEKIFGKYGNIV-QKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 233          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 52/148 (35.14%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            V  L   +T+E L  LF   G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    + +   ANL+I  L   + +K + D FS FG I+ N +++ D  TG SRG  FI +D    ++ AI +  G
Sbjct:   24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM7_HUMAN (RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 383
            +A    D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+     Q + FV F+ E    YA+ +LN IKLYG+PI++
Sbjct:    3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAMNLLNGIKLYGRPIKI 82          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ELAV1_HUMAN6.566e-1635.14ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
ROC5_NICSY8.575e-1630.5333 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PU60B_DANRE1.463e-1529.34Poly(U)-binding-splicing factor PUF60-B OS=Danio r... [more]
ELV1B_XENLA1.910e-1534.46ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
SXL_DROME2.495e-1534.19Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
NUCL_MESAU2.495e-1530.65Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2[more]
SXL_MEGSC3.259e-1534.34Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]
SXL_CHRRU3.259e-1532.04Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL ... [more]
ELAV1_MOUSE3.259e-1535.14ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
RBM7_HUMAN4.256e-1550.62RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
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