FC875604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM7_BOVIN (RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15 Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 3 Query: 141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 452 +A D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F+ E YA+ +LN IKL+G+PI++ +A S +V + +GN P Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSSP 109
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15 Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677 G++S + T + NL TEE L E+F +A + VP+++ +GY F+EF S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 478 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 654
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15 Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677 G++S + T + NL TEE L E+F +A + VP+++ +GY F+EF S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 477 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 653
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15 Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677 G++S + T + NL TEE L E+F +A + VP+++ +GY F+EF S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3) HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15 Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677 G++S + T + NL TEE L E+F +A + VP++ +GY F+EF S EDA A+ N +++ G+ IR+ + S + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 479 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNP-HGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 655
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_MOUSE (Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15 Identity = 57/185 (30.81%), Postives = 93/185 (50.27%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLH---QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677 G+ S + T + NL T+E L E+F +A + VP+ N H +GY F+EF S EDA A+ N +++ G+ IR+ + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 477 GKTSTWSGESKTLVLSNLSYSATKETLEEVFEKA---TFIKVPQ----NPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 649
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15 Identity = 58/182 (31.87%), Postives = 83/182 (45.60%), Query Frame = 3 Query: 87 GMTTRIAPGVGANLLGQHSAERNQDATAYVGN------LDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614 G +AP N L D A G L +T+ L+ LF GP+ + KD T GY FV+F SE DA AIK +N I + K ++V+ A +S+ NL++ NL + + L F +G IV I+RD TG RG F+ ++ E + AI A+N Sbjct: 71 GSMCNMAPAQSTNSLNSGGDGGGGDTQAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDELEKIFGKYGNIV-QKNILRDKLTGRPRGVAFVRFNKREEAQEAISALN 250
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14 Identity = 56/186 (30.11%), Postives = 92/186 (49.46%), Query Frame = 3 Query: 135 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN---------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665 Q + T V NL +EE L ELF +A ++ +P++ +GY FVEF + EDA A+ N ++ G+ IR+ +S + ++ A LF+ L D E+ L ++F + +I+ D DTG+S+GFGF+ + S E + AA EAM + ++T+ +A K Sbjct: 452 QKGGGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNN-QGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS----ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14 Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = 3 Query: 174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614 V L +T+ L+ LF GP+ + +D T GY FV+F +E D+ AIK LN I + K ++V+ A +S+ NL++ NL + + L F +G+IV I+RD TG RG F+ ++ E + AI A+N Sbjct: 114 VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGMIV-QKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 258
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM11_HUMAN (Putative RNA-binding protein 11 OS=Homo sapiens GN=RBM11 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14 Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 3 Query: 144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 383 A+ D T +VGNL+ +V EE+L+ELF+QAGP+ V + KDR + +GFV F+ E YAI +LN I+LYG+PI V Sbjct: 4 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 82 The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 191
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bpback to top |