FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM7_BOVIN (RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 452
            +A    D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+     Q + FV F+ E    YA+ +LN IKL+G+PI++  +A     S +V  +     +GN  P
Sbjct:    3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSSP 109          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677
            G++S    +  T  + NL    TEE L E+F +A     + VP+++     +GY F+EF S EDA  A+   N  ++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  478 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 654          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677
            G++S    +  T  + NL    TEE L E+F +A     + VP+++     +GY F+EF S EDA  A+   N  ++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  477 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 653          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677
            G++S    +  T  + NL    TEE L E+F +A     + VP+++     +GY F+EF S EDA  A+   N  ++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677
            G++S    +  T  + NL    TEE L E+F +A     + VP++      +GY F+EF S EDA  A+   N +++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  479 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNP-HGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 655          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_MOUSE (Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/185 (30.81%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLH---QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677
            G+ S    +  T  + NL    T+E L E+F +A     + VP+    N H   +GY F+EF S EDA  A+   N +++ G+ IR+     + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  477 GKTSTWSGESKTLVLSNLSYSATKETLEEVFEKA---TFIKVPQ----NPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 649          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 58/182 (31.87%), Postives = 83/182 (45.60%), Query Frame = 3
Query:   87 GMTTRIAPGVGANLLGQHSAERNQDATAYVGN------LDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614
            G    +AP    N L         D  A  G       L   +T+  L+ LF   GP+    + KD  T    GY FV+F SE DA  AIK +N I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G IV    I+RD  TG  RG  F+ ++  E +  AI A+N
Sbjct:   71 GSMCNMAPAQSTNSLNSGGDGGGGDTQAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDELEKIFGKYGNIV-QKNILRDKLTGRPRGVAFVRFNKREEAQEAISALN 250          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 56/186 (30.11%), Postives = 92/186 (49.46%), Query Frame = 3
Query:  135 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN---------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            Q      +  T  V NL    +EE L ELF +A    ++ +P++      +GY FVEF + EDA  A+   N  ++ G+ IR+  +S   +  ++ A          LF+  L  D  E+ L ++F        + +I+ D DTG+S+GFGF+ + S E + AA EAM    +   ++T+ +A  K
Sbjct:  452 QKGGGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNN-QGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS----ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614
            V  L   +T+  L+ LF   GP+    + +D  T    GY FV+F +E D+  AIK LN I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G+IV    I+RD  TG  RG  F+ ++  E +  AI A+N
Sbjct:  114 VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGMIV-QKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 258          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM11_HUMAN (Putative RNA-binding protein 11 OS=Homo sapiens GN=RBM11 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 383
            A+   D T +VGNL+ +V EE+L+ELF+QAGP+  V + KDR     + +GFV F+  E   YAI +LN I+LYG+PI V
Sbjct:    4 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 82          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
RBM7_BOVIN4.256e-1542.59RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 S... [more]
NUCL_PONAB5.558e-1530.65Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MACFA5.558e-1530.65Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN5.558e-1530.65Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
NUCL_RAT7.259e-1530.65Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3[more]
NUCL_MOUSE7.259e-1530.81Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2[more]
SXL_MUSDO9.481e-1531.87Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
NUCL_CHICK2.758e-1430.11Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1[more]
SXL_CERCA4.705e-1433.33Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
RBM11_HUMAN6.145e-1448.75Putative RNA-binding protein 11 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
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