FC875604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14 Identity = 52/159 (32.70%), Postives = 81/159 (50.94%), Query Frame = 3 Query: 174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-----------GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 V L +T++ L LF G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A +S+ ANL+I L + +K + D F FG I+ N +++ D TG SRG FI +D ++ AI + NG Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIK-DANLYISGLPRTMTQKDVEDMFLPFGHII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RB87F_DROME (Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13 Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 G+ E Q ++G LD + T++ L F + G +V+V V KD T +G+GF+ + D A + K+ G+ + +A Q+ S + GA LF+G L D DE+ L + F FG IV + I+ D DTG RGF FI +D ++ D I Sbjct: 14 GEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA-QNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIV-SVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_ENCCU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Encephalitozoon cuniculi GN=PAB1 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13 Identity = 57/179 (31.84%), Postives = 91/179 (50.84%), Query Frame = 3 Query: 165 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE---AMNGQYLXHRQITVSYAYKKDTKGERHGT 692 T YVG L P+ + L+ +F G V++V + K + FV F +EEDA+ AI+ +L+ + IRV K +D++ + G N+F+ NL D K L D FS FG IV+ + G S+G+GF+ + +A+ I+ +++G L +I V + KGE T Sbjct: 15 TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKR--AEPVSSFAFVTFENEEDAERAIREYKHYELHNRQIRVMK--KDERPPETG-NIFVKNLPEDFTGKDLDDAFSMFGEIVSCK--VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKT 186
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3) HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13 Identity = 60/192 (31.25%), Postives = 86/192 (44.79%), Query Frame = 3 Query: 165 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL------------------NMIKLYGK------PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKD 668 T +VG L P E L ELF Q GPV +V ++ + +G+G+V F ED A+K + N K GK P + KA + K + D A L I NL E L F+ FG ++ I R PD G RGFGF+ + + + A++ MN + + R + V +A KD Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVA-DKKARLIIRNLSFKCSEDDLKTVFAQFGAVL-EVNIPRKPD-GKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKD 193
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13 Identity = 54/186 (29.03%), Postives = 87/186 (46.77%), Query Frame = 3 Query: 141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665 S E T + L ++ L + F G V +V + DR + +G +VEF + AI + +L G PI V + +K L AN L++G+L ++ E +L F FG I N +M+D DTG S+G+GFI++ E + A+E +NG L R + V + ++ Sbjct: 159 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQ-RLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKI-DNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 342
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RB97D_DROME (Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13 Identity = 48/149 (32.21%), Postives = 78/149 (52.35%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA----SQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 ++G L P TEE L + Q G VV+V V +D T +G+GF+ + D A + I + GK + +A ++ + ++ LF+G L + DE+ L + F FG +V + K++ D TG RGF F+ +D ++A D AI Sbjct: 35 FIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHI-IDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV-SVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13 Identity = 49/181 (27.07%), Postives = 91/181 (50.28%), Query Frame = 3 Query: 126 LLGQHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614 L Q + + Q A A YVG++ ++ E+ + F GP+ ++ + D +T H+G+ FVE+ E A A++ +N + G+ I+V + S ++ KS + +++ ++ PD+ E+ + F AFG I+ K+ + +G+GFI Y + +A D AI +MN Sbjct: 113 LATQRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFN---RIYVASIHPDLSEEDIKSVFEAFGPIL-YCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMN 289
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13 Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGERHG 689 ++G LD + T+E L F + G +V+V V KD T +G+GF+ + D A K K+ G+ + +A QD S + GA LF+G L D DE+ + D F FG IV + I+ D +TG RGF F+ +D ++ D + Q L + + V A K + G Sbjct: 34 FIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK-SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQ-LNGKMVDVKKALPKQNDQQGGG 208
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13 Identity = 53/173 (30.64%), Postives = 82/173 (47.40%), Query Frame = 3 Query: 108 PGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626 P N S E+ Y+ L P T++ L +L G +V+ D+ TN +GYGFV+F S A A+ L ++ A Q ++ NL+I NL +DE+ L + FG +++ +I+RD + G SRG GF +S E + I+ NG+YL Sbjct: 38 PSPSTNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAV-----ASLKANGVQAQMAKQQEQD---PTNLYISNLPISMDEQELENMLKPFGHVIST-RILRDAN-GVSRGVGFARMESTEKCEVVIQHFNGKYL 200
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS2_BOVIN (RNA-binding motif, single-stranded-interacting protein 2 OS=Bos taurus GN=RBMS2 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13 Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626 G + ++ Y+ L P T++ L +L G +V+ D+ TN +GYGFV+F S A A+ L ++ A Q ++ NL+I NL +DE+ L FG +++ +I+RD +G SRG GF +S E +A I NG+Y+ Sbjct: 46 GSTAHDQLSKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELEGMLKPFGQVIST-RILRD-TSGTSRGVGFARMESTEKCEAIITHFNGKYI 200 The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 191
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bpback to top |