FC875604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_CAEEL (Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis elegans GN=hrp-1 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12 Identity = 48/173 (27.75%), Postives = 83/173 (47.98%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHR 635 G S E +VG L T++L+ E + Q G + ++ V +D T +G+GFV F + + D A+K I + GK + +A DK + + L++ + D E +L + F+ +G VT +I+ D T RGFGF+++D ++ D + + HR Sbjct: 13 GDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHI-IDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGT-VTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHR 183
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS1_MOUSE (RNA-binding motif, single-stranded-interacting protein 1 OS=Mus musculus GN=Rbms1 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12 Identity = 47/152 (30.92%), Postives = 77/152 (50.66%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626 Y+ L P T++ L +L G +V+ D+ TN +GYGFV+F S A A+ L ++ A Q ++ NL+I NL +DE+ L + FG +++ +++RD +G SRG GF +S E +A I NG+++ Sbjct: 65 YIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK-----ANGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELENMLKPFGQVIST-RVLRD-SSGASRGVGFARMESTEKCEAVIGHFNGKFI 206
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12 Identity = 51/202 (25.25%), Postives = 102/202 (50.50%), Query Frame = 3 Query: 111 GVGANLLGQHSAERN-----QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE----AMNGQYLXHRQITVSYAYKKDTKGERHG 689 G GA + +AE +D ++G L+ + T++ L + F Q G V++ V +D T +G+GF+ F++ + + + + L GK I +A ++ + A +F+G + D E+ + F+ FG ++ + +M D DTG RGFGF++Y++ A +A + ++G+ + ++ T + + +HG Sbjct: 141 GSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEH--HLDGKIIDPKRAI-PREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVL-DATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHG 338
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12 Identity = 52/178 (29.21%), Postives = 91/178 (51.12%), Query Frame = 3 Query: 162 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674 A+ ++G+L+P + E + F G V++V + ++R+T + GY FVEF A+ + +N L G K ++N A+ K+ + +LF+G+L PDVD+ +LY+ F K++ D TG S+G+GF+ + D E A E L + + +S A K ++ Sbjct: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RO32_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12 Identity = 46/162 (28.40%), Postives = 78/162 (48.15%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 G E Q ++G L + T++ L E F Q G + + V +D T +G+GFV + E+ D ++ K+ G+ + +A + S GA+L F+G + D +E L D F +G I T ++M D +G RGF F+++D + D + Sbjct: 17 GHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12 Identity = 52/178 (29.21%), Postives = 91/178 (51.12%), Query Frame = 3 Query: 162 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674 A+ ++G+L+P + E + F G V++V + ++R+T + GY FVEF A+ + +N L G K ++N A+ K+ + +LF+G+L PDVD+ +LY+ F K++ D TG S+G+GF+ + D E A E L + + +S A K ++ Sbjct: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASR 179
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_PONAB (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12 Identity = 47/163 (28.83%), Postives = 80/163 (49.08%), Query Frame = 3 Query: 129 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 L + E+ Q ++G L + TEE L + Q G + + V +D + +G+GFV F S + D A+ + G+ + +A ++S GA+ LF+G + D +E L D F +G I T +I+ D +G RGFGF+++D + D + Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12 Identity = 47/163 (28.83%), Postives = 80/163 (49.08%), Query Frame = 3 Query: 129 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 L + E+ Q ++G L + TEE L + Q G + + V +D + +G+GFV F S + D A+ + G+ + +A ++S GA+ LF+G + D +E L D F +G I T +I+ D +G RGFGF+++D + D + Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12 Identity = 47/163 (28.83%), Postives = 80/163 (49.08%), Query Frame = 3 Query: 129 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 L + E+ Q ++G L + TEE L + Q G + + V +D + +G+GFV F S + D A+ + G+ + +A ++S GA+ LF+G + D +E L D F +G I T +I+ D +G RGFGF+++D + D + Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12 Identity = 52/178 (29.21%), Postives = 91/178 (51.12%), Query Frame = 3 Query: 162 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674 A+ ++G+L+P + E + F G V++V + ++R+T + GY FVEF A+ + +N L G K ++N A+ K+ + +LF+G+L PDVD+ +LY+ F K++ D TG S+G+GF+ + D E A E L + + +S A K ++ Sbjct: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179 The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 191
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bpback to top |