FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_CAEEL (Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis elegans GN=hrp-1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 48/173 (27.75%), Postives = 83/173 (47.98%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHR 635
            G  S E       +VG L    T++L+ E + Q G + ++ V +D  T   +G+GFV F  + + D A+K    I + GK +   +A    DK   +   +   L++  +  D  E +L + F+ +G  VT  +I+ D  T   RGFGF+++D  ++ D  +   +     HR
Sbjct:   13 GDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHI-IDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGT-VTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHR 183          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS1_MOUSE (RNA-binding motif, single-stranded-interacting protein 1 OS=Mus musculus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 47/152 (30.92%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626
            Y+  L P  T++ L +L    G +V+     D+ TN  +GYGFV+F S   A  A+  L         ++   A Q ++      NL+I NL   +DE+ L +    FG +++  +++RD  +G SRG GF   +S E  +A I   NG+++
Sbjct:   65 YIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK-----ANGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELENMLKPFGQVIST-RVLRD-SSGASRGVGFARMESTEKCEAVIGHFNGKFI 206          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 51/202 (25.25%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  111 GVGANLLGQHSAERN-----QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE----AMNGQYLXHRQITVSYAYKKDTKGERHG 689
            G GA    + +AE       +D   ++G L+ + T++ L + F Q G V++  V +D  T   +G+GF+ F++ +  +  +   +   L GK I   +A   ++  +  A +F+G +  D  E+   + F+ FG ++ +  +M D DTG  RGFGF++Y++  A +A +      ++G+ +  ++ T   + +      +HG
Sbjct:  141 GSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEH--HLDGKIIDPKRAI-PREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVL-DATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHG 338          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 52/178 (29.21%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A+ ++G+L+P + E  +   F   G  V++V + ++R+T +  GY FVEF     A+  +  +N   L G    K  ++N A+  K+  +    +LF+G+L PDVD+ +LY+ F          K++ D  TG S+G+GF+ + D  E   A  E      L  + + +S A  K ++
Sbjct:    3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RO32_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 46/162 (28.40%), Postives = 78/162 (48.15%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            G    E  Q    ++G L  + T++ L E F Q G + +  V +D  T   +G+GFV +   E+ D ++      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I T  ++M D  +G  RGF F+++D  +  D  +
Sbjct:   17 GHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 52/178 (29.21%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A+ ++G+L+P + E  +   F   G  V++V + ++R+T +  GY FVEF     A+  +  +N   L G    K  ++N A+  K+  +    +LF+G+L PDVD+ +LY+ F          K++ D  TG S+G+GF+ + D  E   A  E      L  + + +S A  K ++
Sbjct:    3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASR 179          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_PONAB (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 47/163 (28.83%), Postives = 80/163 (49.08%), Query Frame = 3
Query:  129 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            L +   E+ Q    ++G L  + TEE L   + Q G + +  V +D  +   +G+GFV F S  + D A+       + G+ +   +A   ++S   GA+     LF+G +  D +E  L D F  +G I T  +I+ D  +G  RGFGF+++D  +  D  +
Sbjct:   10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 47/163 (28.83%), Postives = 80/163 (49.08%), Query Frame = 3
Query:  129 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            L +   E+ Q    ++G L  + TEE L   + Q G + +  V +D  +   +G+GFV F S  + D A+       + G+ +   +A   ++S   GA+     LF+G +  D +E  L D F  +G I T  +I+ D  +G  RGFGF+++D  +  D  +
Sbjct:   10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 47/163 (28.83%), Postives = 80/163 (49.08%), Query Frame = 3
Query:  129 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            L +   E+ Q    ++G L  + TEE L   + Q G + +  V +D  +   +G+GFV F S  + D A+       + G+ +   +A   ++S   GA+     LF+G +  D +E  L D F  +G I T  +I+ D  +G  RGFGF+++D  +  D  +
Sbjct:   10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 52/178 (29.21%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A+ ++G+L+P + E  +   F   G  V++V + ++R+T +  GY FVEF     A+  +  +N   L G    K  ++N A+  K+  +    +LF+G+L PDVD+ +LY+ F          K++ D  TG S+G+GF+ + D  E   A  E      L  + + +S A  K ++
Sbjct:    3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ROA1_CAEEL3.372e-1227.75Heterogeneous nuclear ribonucleoprotein A1 OS=Caen... [more]
RBMS1_MOUSE3.372e-1230.92RNA-binding motif, single-stranded-interacting pro... [more]
YHKF_SCHPO4.404e-1225.25Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
TSAP1_HUMAN4.404e-1229.21tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
RO32_XENLA4.404e-1228.40Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]
TSAP1_BOVIN5.752e-1229.21tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
ROA2_PONAB5.752e-1228.83Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_MOUSE5.752e-1228.83Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_HUMAN5.752e-1228.83Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
TSAP1_RAT7.512e-1229.21tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
back to top