FC875604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: CELF4_MACFA (CUG-BP- and ETR-3-like factor 4 OS=Macaca fascicularis GN=BRUNOL4 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11 Identity = 49/152 (32.24%), Postives = 75/152 (49.34%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL---YGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 ++G + + E+ L LF + G + + V KDR T +H+G F+ + E A A L+ K +PI+V A + + LF+G L+ E + F AFG I I+R PD GNS+G F+ Y S + AAI A++G Sbjct: 57 FIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG---DRKLFVGMLNKQQSEDDVRRLFEAFGNI-EECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHG 203
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_SCHAM (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11 Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK-DTKGERHG 689 ++G LD + T+E L + F Q G +V+V V KD T +G+GF+ + D A + K+ G+ + +A + + GA LF+G + +++E L D F +G +V + I+ D +T RGF F+ +D ++ D + N Q + + I V A K D G R G Sbjct: 20 FIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA-QNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVV-SAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQ-IRGKHIDVKKALPKGDAPGGRGG 195
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11 Identity = 48/182 (26.37%), Postives = 89/182 (48.90%), Query Frame = 3 Query: 141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK-SLDVGANLFIGNL---DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674 S E + ++G+L VTEE L +F + V+ V D VT G+G++ F +E+A+ A++ LN K+ GK IR+ + ++ + G N+F NL +P + ++ YDTFS +G I++ R + GF+ ++ + + I+ N ++I + K+ + Sbjct: 84 SFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKLDSR-------KDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVR 258
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: HNRDL_MOUSE (Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus GN=Hnrpdl PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11 Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 3 Query: 141 SAERNQ--DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 608 +A +NQ D ++G L +++ L E + G VV+ + D VT +G+GFV F+ D ++ L KL GK I +A + K + +F+G L PD E+ + + F AFG I N ++ D T RGF FI+Y E +E+ Sbjct: 20 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-LKEHKLDGKLIDPKRA-KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI-ENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 174
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: HNRDL_HUMAN (Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens GN=HNRPDL PE=1 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11 Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 3 Query: 141 SAERNQ--DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 608 +A +NQ D ++G L +++ L E + G VV+ + D VT +G+GFV F+ D ++ L KL GK I +A + K + +F+G L PD E+ + + F AFG I N ++ D T RGF FI+Y E +E+ Sbjct: 139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-LKEHKLDGKLIDPKRA-KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI-ENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11 Identity = 47/199 (23.62%), Postives = 94/199 (47.24%), Query Frame = 3 Query: 141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---------QDKKSLDVGANL-------FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGERHG 689 S + N+ T +VG L V ++ L + F + G +V V D + +GYG+V+F + E A A+ ++ G+ + ++ ++ +++ + G L F+GNL + E L F G I + ++ DP +G +GFG++++ +++ +E MNG ++ R + ++ + G R G Sbjct: 256 SQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDI-QSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTPRTGGGSRGG 452
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3 Query: 147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 E Q ++G L + T+E L F Q G + + V +D T +G+GFV + + E+ D A+ K+ G+ + +A + S GA+L F+G + D +E L D F +G I +IM D +G RGF F+++D ++ D + Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3 Query: 147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 E Q ++G L + T+E L F Q G + + V +D T +G+GFV + + E+ D A+ K+ G+ + +A + S GA+L F+G + D +E L D F +G I +IM D +G RGF F+++D ++ D + Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3 Query: 147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 E Q ++G L + T+E L F Q G + + V +D T +G+GFV + + E+ D A+ K+ G+ + +A + S GA+L F+G + D +E L D F +G I +IM D +G RGF F+++D ++ D + Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3 Query: 147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 E Q ++G L + T+E L F Q G + + V +D T +G+GFV + + E+ D A+ K+ G+ + +A + S GA+L F+G + D +E L D F +G I +IM D +G RGF F+++D ++ D + Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 191
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bpback to top |