FC875604 | Citrus Genome Database

Overview


Name	FC875604
Unique Name	FC875604
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	696

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 63/163 (38.65%), Postives = 96/163 (58.90%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITV 647
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L +RQ+ V
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177

HSP 2 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 52/185 (28.11%), Postives = 94/185 (50.81%), Query Frame = 3

Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS 650
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ +  + + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVT 374

HSP 3 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 63/163 (38.65%), Postives = 96/163 (58.90%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITV 647
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L +RQ+ V
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177

HSP 2 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 52/185 (28.11%), Postives = 94/185 (50.81%), Query Frame = 3

Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS 650
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ +  + + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374

HSP 3 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 63/163 (38.65%), Postives = 96/163 (58.90%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITV 647
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L +RQ+ V
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177

HSP 2 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 52/185 (28.11%), Postives = 94/185 (50.81%), Query Frame = 3

Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS 650
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ +  + + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374

HSP 3 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 63/163 (38.65%), Postives = 96/163 (58.90%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITV 647
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L +RQ+ V
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177

HSP 2 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 52/185 (28.11%), Postives = 94/185 (50.81%), Query Frame = 3

Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS 650
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ +  + + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374

HSP 3 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24
Identity = 62/163 (38.04%), Postives = 101/163 (61.96%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITV 647
            A+ YVG+L   V E  L++ F  AGPV+++ V +D +T    GY +V F+   DA+ A+  +N   +  KPIR+  + +D      G  N+FI NLD  +D K +YDTFSAFG I+ + K+  D + GNS+G+GF+ +++ EA++ +I+ +NG  L  +++ V
Sbjct:    2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL-SCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYV 162

HSP 2 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 59/183 (32.24%), Postives = 102/183 (55.74%), Query Frame = 3

Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK---ASQDKKSLDVGANLF----IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXH-RQITVSYAYKK 665
            S  R+     ++ NLD  +  + +++ F   G +++  V  D   N  +GYGFV F +EE A+ +I  +N + L GK + V K     + +K L   A LF    + N   D D++ L + F  +G I T+ K+M   D G S+GFGF+++++ EA++AA++A+NG+ +   + + V+ A KK
Sbjct:   83 SLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI-TSYKVMSKED-GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 262

HSP 3 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 52/186 (27.96%), Postives = 90/186 (48.39%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL-YGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            YV N      +E L E F   G + + Y    +     +G+GFV F + E A+ A++ LN   +  GK + V +A                  Q +     G NL++ NLD  +D+  L   FS +G I T+ K+M D + G S+GFGF+ +++   +  A+  +NG+ +  + + V+ A +K+ +
Sbjct:  186 YVKNFTEDFDDEKLKEFFEPYGKITS-YKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNI-TSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEER 368

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 60/177 (33.90%), Postives = 105/177 (59.32%), Query Frame = 3

Query:  159 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGERH 686
            D   YVGNLD  +TE++L + F   GP+ N+ +  D+  N +  Y FVE+    DA+ A++ LN  ++    +++N A Q ++S  D   NLF+G+L+ +VD++ L + F  F   ++   +M D  TG+SRG+GF+S+ S + +  A+++M GQ L  R + +++A K+D     +
Sbjct:   74 DRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSG-HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNN 248

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 64/175 (36.57%), Postives = 105/175 (60.00%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS-YAYKKDTKGE 680
            A+ YVG L+P V+E LL+++F   G V ++ V +D +TN   GY +V F   E    AI+ LN   + GKP R+  + +D      G+ N++I NL P +D K L++TFS FG I+ + K+  D + G SRGFGF+ +++   +  AIEA++G  +  +++ V+ +  KKD + +
Sbjct:   38 ASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNIL-SCKVATD-ENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSK 210

HSP 2 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 60/185 (32.43%), Postives = 98/185 (52.97%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            YV N+D + ++E   ELF + G + +  + KD    L +G+GFV F     A  A+  LN ++  G+ + V +A +  + L                   G NLF+ NLD  +D++ L + F+ FG I T+ K+MRD +TGNSRGFGF+ + + E +  AI   N Q +  + + V+ A +K+ +
Sbjct:  222 YVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKL-RGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTI-TSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVR 403

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.550e-24
Identity = 69/181 (38.12%), Postives = 107/181 (59.12%), Query Frame = 3

Query:  144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS-YAYKKDTKGE 680
            A + + A+ YVG+L   VTE+LL+  F   GPV+++ + +D+VT    GY +V F    DA  A+  +N   + GK IR+  + +D      G  N+FI NLD  +D K LY+ FSAFG I+++ K+M D D G S+G+ F+ + +  A+D AIE MNG+ L   ++ V  +  +KD + E
Sbjct:    4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-KVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAE 181

HSP 2 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 57/179 (31.84%), Postives = 97/179 (54.19%), Query Frame = 3

Query:  150 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            R+     ++ NLD  +  + L+E F   G +++  V  D   +  +GY FV F+++  AD AI+ +N   L G  +       R ++ ++ +       N++I N   D+D++ L D FS +G  ++  K+M D  +G S+GFGF+S+DS EA+  A+E MNG+ +  + I V  A KK
Sbjct:   94 RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLS-VKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268

HSP 3 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 53/190 (27.89%), Postives = 98/190 (51.58%), Query Frame = 3

Query:  144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-------KKSLDV----------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYK 662
            ++ ++    Y+ N    + +E L ++F + G  ++V V  D  +   +G+GFV F S E A  A++ +N   + G+ I V +A +        K+  +           G  L+I NLD  +D++ L + FS+FG I +  K+M++   G S+GFG I + S E +  A+  MNG+ L  + ++++ A +
Sbjct:  184 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSI-SRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.555e-24
Identity = 64/174 (36.78%), Postives = 103/174 (59.20%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ YVG+L P+V+E+ L+E+F Q G V N+ V +D  T     Y +V + +  DA+ A+  LN   + GK  R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I+ + K++ D D  +S+GFGF+ Y++ E++D AI  +NG  +  +++ V        +G+
Sbjct:   10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNIL-SCKVVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQ 181

HSP 2 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 57/193 (29.53%), Postives = 94/193 (48.70%), Query Frame = 3

Query:  141 SAERNQDA-----TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDV---GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            S ER Q         +  NL   V  + L EL  Q G + N+ +  D      +G+GF  F S E A   ++  N    +GKPI       ++ + ++ K + +    G NL+I N+D  +D   L + FS FG I T+  +M+D     S+GFGF+ Y + + +  A+  MNG+ +  + + V+ A +KD +
Sbjct:  176 SKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADD-KGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTI-TSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIR 366

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.366e-21
Identity = 62/173 (35.84%), Postives = 99/173 (57.23%), Query Frame = 3

Query:  156 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            Q  T YVGNL   VTE L+ +LF Q GP  +  +  +  +N    Y FVEF    DA  A+  +N  K+ GK ++VN A   S  KK      ++F+G+L P++  + +   F+ FG I ++ ++++D  TG S+G+GF+S+ +   ++ AI  M GQ+L  RQI  ++A +K
Sbjct:    7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176

The following BLAST results are available for this feature:

BLAST of FC875604 vs. ExPASy Swiss-Prot

BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191


Match Name	E-value	Identity	Description
PABP5_MACMU	1.011e-24	38.65	Polyadenylate-binding protein 5 OS=Macaca mulatta ...	[more]
PABP5_HYLLA	1.011e-24	38.65	Polyadenylate-binding protein 5 OS=Hylobates lar G...	[more]
PABP5_HUMAN	1.011e-24	38.65	Polyadenylate-binding protein 5 OS=Homo sapiens GN...	[more]
PABP5_GORGO	1.011e-24	38.65	Polyadenylate-binding protein 5 OS=Gorilla gorilla...	[more]
PABP_DROME	1.320e-24	38.04	Polyadenylate-binding protein OS=Drosophila melano...	[more]
PUB1_YEAST	5.016e-24	33.90	Nuclear and cytoplasmic polyadenylated RNA-binding...	[more]
PABP_ASHGO	5.016e-24	36.57	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PAB4L_HUMAN	6.550e-24	38.12	Polyadenylate-binding protein 4-like OS=Homo sapie...	[more]
PAP1A_DICDI	8.555e-24	36.78	Polyadenylate-binding protein 1-A OS=Dictyostelium...	[more]
TIAR_HUMAN	1.366e-21	35.84	Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG