FC875604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20 Identity = 65/188 (34.57%), Postives = 100/188 (53.19%), Query Frame = 3 Query: 156 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYV----PKDRVTNLHQG-----------YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665 Q T YVGNL VTE L+ +LF Q GP + + P R N G Y FVEF DA A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI M GQ+L RQI ++A +K Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20 Identity = 58/169 (34.32%), Postives = 102/169 (60.36%), Query Frame = 3 Query: 153 NQDATAYVGNLDPQVTEELLWELFVQAG--PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD--KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITV 647 +Q + YVG+L V E +L ELF + G + +++V +D T GY +V F + DA+ A+ LN ++GKP R+ + +D K+ +VG N+F+ NL+ VD +LYDTFS+FG I++ + + G S+G+G++ +++ ++++ AIE +NG + + I V Sbjct: 181 HQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIFVKNLEKGVDNAMLYDTFSSFGNILS---CKVEFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV 345 HSP 2 Score: 71.2478 bits (173), Expect = 5.752e-12 Identity = 52/194 (26.80%), Postives = 93/194 (47.94%), Query Frame = 3 Query: 180 NLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN---------------------MIKLYGKPIRVNKASQD--------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674 N D +T E+L + + + K+ +G G VEF+++EDA K+L I++ GKPI +++ KK+ D+ +LFI N+D +D L+ + F+ G I+ KI++D + N +GFGFIS+ + + A++++NG +QI VS++ K + + Sbjct: 365 NADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQ---KILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDL--SLFINNIDESIDRDLIKEEFAKHGTII-GIKIVQDENARN-KGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQ 551
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20 Identity = 62/185 (33.51%), Postives = 101/185 (54.59%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665 GQ +E ++A +VGNL V E L +F AG V V +R T+ +G+GFV + E+A+ A+++LN + G+ + VNKA+ + + +++GNL DVD L FS G +V + +++ D +TG SRGFGF++ S + AI A++GQ L R + V+ A ++ Sbjct: 45 GQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVV-SARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20 Identity = 68/186 (36.56%), Postives = 97/186 (52.15%), Query Frame = 3 Query: 147 ERN--QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK--------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYA 656 ERN D +VGNL L ELF +AG V V V D++T +G+GFV S+E+ + A + N +L G+ +RVN +K S D +++GNL VD+ L FS G +V + K++ D D+G SRGFGF++Y S E + AIE+++G L R I VS A Sbjct: 80 ERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV-DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20 Identity = 63/187 (33.69%), Postives = 98/187 (52.41%), Query Frame = 3 Query: 147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665 E T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +K Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 HSP 2 Score: 70.0922 bits (170), Expect = 1.281e-11 Identity = 53/181 (29.28%), Postives = 88/181 (48.62%), Query Frame = 3 Query: 141 SAERNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD---------------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 S +R+QD +VG+L P++T E + F G + + V KD T +GYGFV F ++ DA+ AI+ + L G+ IR N A++ +S ++ G + + E+L+ TFS FG I+ +I PD +G+ F+ + S E++ AI ++NG Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIM---EIRVFPD----KGYSFVRFSSHESAAHAIVSVNG 271
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20 Identity = 63/187 (33.69%), Postives = 98/187 (52.41%), Query Frame = 3 Query: 147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665 E T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +K Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 HSP 2 Score: 70.8626 bits (172), Expect = 7.512e-12 Identity = 53/181 (29.28%), Postives = 89/181 (49.17%), Query Frame = 3 Query: 141 SAERNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD---------------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 S +R+QD +VG+L P++T E + F G + + V KD T +GYGFV F ++ DA+ AI+ + L G+ IR N A++ +S ++ G + + E+L+ TFS FG I+ +I PD +G+ F+ ++S E++ AI ++NG Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM---EIRVFPD----KGYSFVRFNSHESAAHAIVSVNG 271
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19 Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 3 Query: 147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665 E +++A +VGNL V + L LF QAG V V +R T+ +G+GFV S ++A+ A++ N L G+ + VNKA+ + + + +++GNL DVD L FS G +V +++ D +TG SRGFGF++ + + AI A++GQ L R I V+ A ++ Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV-EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.720e-19 Identity = 59/180 (32.78%), Postives = 100/180 (55.56%), Query Frame = 3 Query: 147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665 E ++DA +VGNL + E L +LF QAG V V +R T+ +G+GFV + E+AD A+++ + L G+ + VNKA+ + ++ +++GN+ D+D+ L FS G +V + +++ D ++G SRGFGF++ S AI ++GQ L R I V+ A ++ Sbjct: 92 EPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVV-SARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19 Identity = 57/165 (34.55%), Postives = 88/165 (53.33%), Query Frame = 3 Query: 126 LLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 620 LLG + A + V L +T++ LF G + + + +D++T GYGFV + DAD AI LN +KL K I+V+ A S+ ANL++ L + +K + FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ Sbjct: 27 LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLFSQYGRIITS-RILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19 Identity = 68/192 (35.42%), Postives = 97/192 (50.52%), Query Frame = 3 Query: 147 ERN--QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK--------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYA 656 ERN D +VGNL L ELF +AG V V V D++T +G+GFV S+E+ + A + N +L G+ +RVN +K S D +++GNL VD+ L FS G +V + K++ D D+G SRGFGF++Y S E + AIE+++G L R I VS A Sbjct: 80 ERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV-DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270 The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 191
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bpback to top |