FC875608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47 Identity = 85/116 (73.28%), Postives = 104/116 (89.66%), Query Frame = 2 Query: 329 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 ++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++YPM APKVRFLTKIYHPNID+LGRICLD+LK WSPALQIRTVLLSIQALL++P P Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNP 117
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.550e-44 Identity = 89/117 (76.07%), Postives = 99/117 (84.62%), Query Frame = 2 Query: 329 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQ-SPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 + LP RIIKETQRLL+EP PGI A P E N RYF+V+I G ++ SP+EGG FK EL L EEYPMAAPKVRF+TKIYHPN+DKL RI LDILKDKWSPALQIRTVLLSIQALL+AP P Sbjct: 2 AELPHRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNP 118
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42 Identity = 81/114 (71.05%), Postives = 92/114 (80.70%), Query Frame = 2 Query: 335 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 LP+RIIKE + L +P PGI A+P+EDN+RYF + + GP QS YEGG F LELFLP+EYPM P VRFLTKIYHPN+DKLGRICL LK WSPALQIRTVLLSIQAL+ AP P Sbjct: 3 LPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNP 116
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28 Identity = 63/115 (54.78%), Postives = 74/115 (64.35%), Query Frame = 2 Query: 344 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPTP 676 R+ +E Q L EP PG+ +E NM I+G + SPYEGG+F LE+ +PE YP PK+RFLT IYHPNID GRICLDIL K W PAL I TVL SIQ L+S P P Sbjct: 6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNP 120
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27 Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 2 Query: 341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 RRI+KE + L +P SA P+ ++M ++ I+GP +SPY GGVF + + P +YP PKV F TK++HPNI+ G ICLDILKD+WSPAL I VLLSI +LL+ P P Sbjct: 4 RRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNP 115
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27 Identity = 60/115 (52.17%), Postives = 73/115 (63.48%), Query Frame = 2 Query: 344 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPTP 676 R+ +E L +EP PGI+ +D M ILG +PYE GVFKLE+ +PE YP P++RFLT IYHPNID GRICLD+L K W P+L I TVL SIQ L+S P P Sbjct: 6 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 120
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27 Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 2 Query: 341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 +RI+KE + L +P SA P ++M ++ I+GPT SPY GGVF + + P +YP PKV F TK++HPNI+ G ICLDILK++WSPAL I VLLSI +LL+ P P Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27 Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 2 Query: 341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 +RI+KE + L +P SA P ++M ++ I+GP +SPY GGVF + + P +YP PKV F TK+YHPNI+ G ICLDILK++WSPAL I VLLSI +LL+ P P Sbjct: 4 KRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26 Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 2 Query: 341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 +RI+KE + L +P SA P ++M ++ I+GP +SPY GGVF + + P +YP PKV F TK++HPNI+ G ICLDILK++WSPAL I VLLSI +LL+ P P Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26 Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 2 Query: 341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 +RI+KE + L +P SA P ++M ++ I+GP++SPY GGVF + + P +YP PKV F TK++HPNI+ G ICLDILK++WSPAL I VLLSI +LL+ P P Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115 The following BLAST results are available for this feature:
BLAST of FC875608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875608 ID=FC875608; Name=FC875608; organism=Citrus clementina; type=EST; length=707bpback to top |