FC875608

Overview
NameFC875608
Unique NameFC875608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 85/116 (73.28%), Postives = 104/116 (89.66%), Query Frame = 2
Query:  329 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            ++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++YPM APKVRFLTKIYHPNID+LGRICLD+LK  WSPALQIRTVLLSIQALL++P P
Sbjct:    2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNP 117          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.550e-44
Identity = 89/117 (76.07%), Postives = 99/117 (84.62%), Query Frame = 2
Query:  329 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQ-SPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            + LP RIIKETQRLL+EP PGI A P E N RYF+V+I G ++ SP+EGG FK EL L EEYPMAAPKVRF+TKIYHPN+DKL RI LDILKDKWSPALQIRTVLLSIQALL+AP P
Sbjct:    2 AELPHRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNP 118          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 81/114 (71.05%), Postives = 92/114 (80.70%), Query Frame = 2
Query:  335 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            LP+RIIKE + L  +P PGI A+P+EDN+RYF + + GP QS YEGG F LELFLP+EYPM  P VRFLTKIYHPN+DKLGRICL  LK  WSPALQIRTVLLSIQAL+ AP P
Sbjct:    3 LPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNP 116          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 63/115 (54.78%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  344 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPTP 676
            R+ +E Q L  EP PG+    +E NM      I+G + SPYEGG+F LE+ +PE YP   PK+RFLT IYHPNID  GRICLDIL    K  W PAL I TVL SIQ L+S P P
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNP 120          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            RRI+KE + L  +P    SA P+ ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILKD+WSPAL I  VLLSI +LL+ P P
Sbjct:    4 RRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNP 115          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 60/115 (52.17%), Postives = 73/115 (63.48%), Query Frame = 2
Query:  344 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPTP 676
            R+ +E   L +EP PGI+    +D M      ILG   +PYE GVFKLE+ +PE YP   P++RFLT IYHPNID  GRICLD+L    K  W P+L I TVL SIQ L+S P P
Sbjct:    6 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 120          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI+KE + L  +P    SA P  ++M ++   I+GPT SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ P P
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI+KE + L  +P    SA P  ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK+YHPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ P P
Sbjct:    4 KRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI+KE + L  +P    SA P  ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ P P
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI+KE + L  +P    SA P  ++M ++   I+GP++SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ P P
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115          
The following BLAST results are available for this feature:
BLAST of FC875608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UBC13_YEAST5.694e-4773.28Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UE2NL_HUMAN1.550e-4476.07Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC13_SCHPO3.233e-4271.05Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBE2T_XENLA1.558e-2854.78Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC29_ARATH1.010e-2751.79Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBE2T_HUMAN3.837e-2752.17Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC4_SOLLC5.011e-2750.89Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC11_ARATH5.011e-2750.89Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC8_ARATH1.116e-2650.00Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH1.116e-2650.00Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC31405G10EF CTVClemen1 Citrus clementina cDNA clone C31405G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875608 ID=FC875608; Name=FC875608; organism=Citrus clementina; type=EST; length=707bp
GAAAATCTTCCTGAGAAAATCAGAGGAATCATTTGCAATAACAATTTTGG
AAGATAATAGTTTAATCCAAATGGGAGTGGTGAAGATCTAGAAGGGACAA
AAATGTAAAATCAACTTCCCAAAAAAGACTAGTATTGTTTCGCATAAATA
AATAATTAAAATTAAAATTAAGTTAAAAAAAAAAAACAACTTTGATCCAT
CATTTCACTTAAACTTCTTGTATTCTATTTGCTATTCTGTTAGACTTAGA
AAACCCTATCAGCGTTCTTTCTCTGCAACAACAAGAAGGTTAAAAAACAA
AAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTCCCTCGACGTATCA
TCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACCAGGAATAAGTGCA
TCTCCCTCGGAAGATAATATGCGATACTTTAATGTGATGATCCTTGGTCC
AACACAATCTCCATATGAAGGAGGGGTGTTCAAATTGGAATTATTTTTGC
CTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATTTCTTACCAAGATA
TATCATCCTAACATTGATAAGCTTGGAAGGATTTGTCTTGATATTCTGAA
AGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACTTTTGAGCATTC
AAGCACTTCTGAGTGCTCCTACCCCGATGATCCTCTCTCTGAGACATTGC
CAAACAC
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