FC875608

Overview
NameFC875608
Unique NameFC875608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI  E + ++S+ +   S   + +N+  +  +I GP  +PYEGG+F L +  P +YP   PK  F T IYHPNI+  G IC++ILKDKW+PAL +  VLLSI  LL  P P
Sbjct:   11 QRIAMEYRAMISKESL-FSIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNP 121          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 53/116 (45.69%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  323 ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 670
            A   + +R+ +E   L+     GISA P  DN+  +   I G   + YE   +KL L  P  YP  AP V+FLT  YHPN+D  G ICLDILK+KWS    +RT+LLSIQ+LL  P
Sbjct:   27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEP 142          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 47/113 (41.59%), Postives = 71/113 (62.83%), Query Frame = 2
Query:  332 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 670
            ++ +R+ +E + LL    PGI+A P  DN+  +   + GP  + YE   +KL L  P +YP   P V+F T  +HPN+D+ G ICLDILK+ W+ +  +RT+LLS+Q+LL  P
Sbjct:   30 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEP 142          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 53/133 (39.85%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  272 SATTRRLKNKKKSILEMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 670
            +A++   +  ++S    A  ++ +R+ +E   L+     GISA P  DN+  +   I G   + YE   +KL L  P  YP  AP V+F+T  +HPN+D  G ICLDILKDKWS    +RT+LLS+Q+LL  P
Sbjct:   10 AASSVASRKGQESGTSAARGSVGKRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEP 142          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 48/123 (39.02%), Postives = 73/123 (59.35%), Query Frame = 2
Query:  308 SILEMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            S +E  +  + R++ KE   L + P  G+   P+E ++      I GP  +PYEGG FK++L L +++P   PK  FLTKI+HPN+ K G IC++ LK  W   L ++ +LL+I+ LL  P P
Sbjct:    5 SNVENLSPQIIRQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNP 127          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 58/145 (40.00%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  296 NKKKSILEMANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKV---------------RFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            NK +   +M+N  L R  R  KE          GI     E+N+      I GP  +PY GG F++++ +PE YP   PKV               +F+T+I+HPNI  + G ICLDILKDKW+ +L +RTVLLS+QA+L +P P
Sbjct:    7 NKMQFSDKMSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEP 151          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R+++KE Q + S P  GI    +E ++     +I GP  +PY  G+F+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMKELQDMESTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 43/112 (38.39%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R++++E Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++P+  PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 43/112 (38.39%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R++++E Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++P+  PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 43/112 (38.39%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R++++E Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++P+  PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
The following BLAST results are available for this feature:
BLAST of FC875608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UBC31_ARATH5.366e-2144.64Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBE2C_HUMAN9.153e-2145.69Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_SPISO1.195e-2041.59Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBE2C_XENLA1.561e-2039.85Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2S_BRAFL4.543e-2039.02Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBC21_CAEEL4.543e-2040.00Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UBE2S_DROGR1.012e-1940.18Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBE2S_DROSI1.322e-1938.39Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]
UBE2S_DROSE1.322e-1938.39Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROME1.322e-1938.39Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionC31405G10EF CTVClemen1 Citrus clementina cDNA clone C31405G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875608 ID=FC875608; Name=FC875608; organism=Citrus clementina; type=EST; length=707bp
GAAAATCTTCCTGAGAAAATCAGAGGAATCATTTGCAATAACAATTTTGG
AAGATAATAGTTTAATCCAAATGGGAGTGGTGAAGATCTAGAAGGGACAA
AAATGTAAAATCAACTTCCCAAAAAAGACTAGTATTGTTTCGCATAAATA
AATAATTAAAATTAAAATTAAGTTAAAAAAAAAAAACAACTTTGATCCAT
CATTTCACTTAAACTTCTTGTATTCTATTTGCTATTCTGTTAGACTTAGA
AAACCCTATCAGCGTTCTTTCTCTGCAACAACAAGAAGGTTAAAAAACAA
AAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTCCCTCGACGTATCA
TCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACCAGGAATAAGTGCA
TCTCCCTCGGAAGATAATATGCGATACTTTAATGTGATGATCCTTGGTCC
AACACAATCTCCATATGAAGGAGGGGTGTTCAAATTGGAATTATTTTTGC
CTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATTTCTTACCAAGATA
TATCATCCTAACATTGATAAGCTTGGAAGGATTTGTCTTGATATTCTGAA
AGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACTTTTGAGCATTC
AAGCACTTCTGAGTGCTCCTACCCCGATGATCCTCTCTCTGAGACATTGC
CAAACAC
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