FC875608

Overview
NameFC875608
Unique NameFC875608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R++++E Q + + P  GI    +E ++     +I GP  +PY  GVF+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R++++E Q + + P  GI    +E ++     +I GP  +PY  GVF+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R++++E Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R+++KE Q + + P  GI    +E ++      I GP  +PY  GVF+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R+++KE Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 57/129 (44.19%), Postives = 72/129 (55.81%), Query Frame = 2
Query:  329 SNLPRRIIKETQRLLSEPAPGIS-------ASPSEDNMRYFNV--MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPTP 676
            + L  R+ KE + LLS+P  G S       A+ S D   +  +   I GP  + Y  G+F L++ +PE YP   P V F T IYHPNID  GRICLDIL    K  W P+L I TVL S++ LLS P P
Sbjct:    5 ARLSLRMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNP 133          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROWI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila willistoni GN=GK16201 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R++++E Q + + P  GI    +E ++     +I GP  +PY  GVF+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMRELQEMENTPPEGIKVLINESDVTDIQALIDGPAGTPYAIGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 46/124 (37.10%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAP 670
            +R++KE Q+L+ +  PGI A P SE+N+  ++ +I GP  +PY  GVF  +L  P++YP++ PK+ F   I HPNI   G +C+ IL             +++WSP   +  +LLS+ ++LS P
Sbjct:    7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEP 130          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R++++E Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            R++++E Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  P P
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNP 128          
The following BLAST results are available for this feature:
BLAST of FC875608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UBE2S_DROYA1.726e-1939.29Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]
UBE2S_DROER1.726e-1939.29Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UBE2S_DROAN2.255e-1938.39Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBE2S_DROVI2.945e-1940.18Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBE2S_DROMO2.945e-1939.29Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UBC37_ARATH2.945e-1944.19Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBE2S_DROWI3.846e-1939.29Ubiquitin-conjugating enzyme E2 S OS=Drosophila wi... [more]
UBC7_YEAST3.846e-1937.10Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2S_DROPS5.023e-1938.39Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE5.023e-1938.39Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]

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Properties
Property NameValue
Genbank descriptionC31405G10EF CTVClemen1 Citrus clementina cDNA clone C31405G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875608 ID=FC875608; Name=FC875608; organism=Citrus clementina; type=EST; length=707bp
GAAAATCTTCCTGAGAAAATCAGAGGAATCATTTGCAATAACAATTTTGG
AAGATAATAGTTTAATCCAAATGGGAGTGGTGAAGATCTAGAAGGGACAA
AAATGTAAAATCAACTTCCCAAAAAAGACTAGTATTGTTTCGCATAAATA
AATAATTAAAATTAAAATTAAGTTAAAAAAAAAAAACAACTTTGATCCAT
CATTTCACTTAAACTTCTTGTATTCTATTTGCTATTCTGTTAGACTTAGA
AAACCCTATCAGCGTTCTTTCTCTGCAACAACAAGAAGGTTAAAAAACAA
AAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTCCCTCGACGTATCA
TCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACCAGGAATAAGTGCA
TCTCCCTCGGAAGATAATATGCGATACTTTAATGTGATGATCCTTGGTCC
AACACAATCTCCATATGAAGGAGGGGTGTTCAAATTGGAATTATTTTTGC
CTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATTTCTTACCAAGATA
TATCATCCTAACATTGATAAGCTTGGAAGGATTTGTCTTGATATTCTGAA
AGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACTTTTGAGCATTC
AAGCACTTCTGAGTGCTCCTACCCCGATGATCCTCTCTCTGAGACATTGC
CAAACAC
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