FC875608

Overview
NameFC875608
Unique NameFC875608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI KE   L  +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +YP   PK+ F TKIYHPNI+  G ICLDILKD+WSPAL +  VLLSI +LL+   P
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANP 116          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 60/115 (52.17%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  344 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPTP 676
            R+ KE   L  EP PGI+    +D +      ILG   +PYE GVF LE+ +PE YP   P+VRFLT IYHPNID  GRICLDIL    K  W P+L I TVL SIQ L++ P P
Sbjct:    6 RLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNP 120          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 57/112 (50.89%), Postives = 73/112 (65.18%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI +E   L  +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+D+WSPAL I  VLLSI +LL+ P P
Sbjct:    4 KRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNP 115          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 50/112 (44.64%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP  +PYE G F+L L   EEYP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + P P
Sbjct:    7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNP 118          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 50/112 (44.64%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP  +PYE G F+L L   EEYP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + P P
Sbjct:    7 RRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNP 118          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI KE Q L  +P    SA P  D++ ++   I+GP +SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  P P
Sbjct:    4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 50/112 (44.64%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP  +PYE G F+L L   EEYP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + P P
Sbjct:    7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNP 118          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  P P
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  P P
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  P P
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115          
The following BLAST results are available for this feature:
BLAST of FC875608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UBC4_YEAST5.540e-2650.89Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBE2T_MOUSE7.236e-2652.17Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBC4_SCHPO7.236e-2650.89Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC2_YEAST7.236e-2644.64Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_KLULA7.236e-2644.64Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_CAEEL7.236e-2651.79Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC2_ASHGO7.236e-2644.64Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UB2D3_RAT7.236e-2651.79Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB7.236e-2651.79Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE7.236e-2651.79Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405G10EF CTVClemen1 Citrus clementina cDNA clone C31405G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875608 ID=FC875608; Name=FC875608; organism=Citrus clementina; type=EST; length=707bp
GAAAATCTTCCTGAGAAAATCAGAGGAATCATTTGCAATAACAATTTTGG
AAGATAATAGTTTAATCCAAATGGGAGTGGTGAAGATCTAGAAGGGACAA
AAATGTAAAATCAACTTCCCAAAAAAGACTAGTATTGTTTCGCATAAATA
AATAATTAAAATTAAAATTAAGTTAAAAAAAAAAAACAACTTTGATCCAT
CATTTCACTTAAACTTCTTGTATTCTATTTGCTATTCTGTTAGACTTAGA
AAACCCTATCAGCGTTCTTTCTCTGCAACAACAAGAAGGTTAAAAAACAA
AAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTCCCTCGACGTATCA
TCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACCAGGAATAAGTGCA
TCTCCCTCGGAAGATAATATGCGATACTTTAATGTGATGATCCTTGGTCC
AACACAATCTCCATATGAAGGAGGGGTGTTCAAATTGGAATTATTTTTGC
CTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATTTCTTACCAAGATA
TATCATCCTAACATTGATAAGCTTGGAAGGATTTGTCTTGATATTCTGAA
AGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACTTTTGAGCATTC
AAGCACTTCTGAGTGCTCCTACCCCGATGATCCTCTCTCTGAGACATTGC
CAAACAC
back to top