FC875608

Overview
NameFC875608
Unique NameFC875608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI KE   L  +P    SA P  D++ ++   I+GP  S Y+GGVF L +  P +YP   PK+ F TKIYHPNI+  G ICLDIL+ +WSPAL +  VLLSI +LL  P P
Sbjct:    4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNP 115          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 46/110 (41.82%), Postives = 79/110 (71.82%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 670
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P+V+F+++++HPN+   G +CLDIL+++WSP   +  VL SIQ+LL+ P
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDP 116          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 47/110 (42.73%), Postives = 76/110 (69.09%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 670
            RR++++ +R+  +P  G+SASP  DN+  +N +I+GP  +P+E G FKL L   E+YP   P V+F++ ++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL+ P
Sbjct:    7 RRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDP 116          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 45/110 (40.91%), Postives = 78/110 (70.91%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 670
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL+ P
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDP 116          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 45/110 (40.91%), Postives = 78/110 (70.91%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 670
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL+ P
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDP 116          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 59/112 (52.68%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            +RI KE   +  +P P  SA P  DN+  +   ILGP  S YEGGVF L++    EYP   PKV F T+IYH NI+  G ICLDILKD WSPAL I  VLLSI +LL+   P
Sbjct:   89 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 200          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 44/110 (40.00%), Postives = 78/110 (70.91%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 670
            RR++++ +R+  +P  G+SASP  DN+  +N +I+GP ++P+E G F++ L   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  +L S+Q+LL+ P
Sbjct:    7 RRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDP 116          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 62/143 (43.36%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  248 RKPYQRSFSATTRRLKNKKKSILEMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            ++P +       +  K   K+  +++ S   +RI KE   +  +P P  SA P  DN+  +   ILGP  S YEGGVF L++    +YP   PKV F T+IYH NI+  G ICLDILKD WSPAL I  VLLSI +LL+   P
Sbjct:   29 QEPEREQVQPKKKEGKISSKTAAKLSTS--AKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 169          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 59/116 (50.86%), Postives = 71/116 (61.21%), Query Frame = 2
Query:  329 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676
            S   +RI KE   +  +P P  SA P  DN+  +   ILGP  S YEGGVF L++    +YP   PKV F T+IYH NI+  G ICLDILKD WSPAL I  VLLSI +LL+   P
Sbjct:   54 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP 169          
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 45/110 (40.91%), Postives = 77/110 (70.00%), Query Frame = 2
Query:  341 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 670
            RR++++ +R+  +   G+SASP  DN+  +N +I+GP  +P+E G F+L L   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   + ++L SIQ+LL+ P
Sbjct:    7 RRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDP 116          
The following BLAST results are available for this feature:
BLAST of FC875608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UB2D1_BOVIN2.328e-2449.11Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC2_TRIHA3.040e-2441.82Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_SCHPO3.040e-2442.73Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_EMENI3.970e-2440.91Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU3.970e-2440.91Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBCD2_DROME6.773e-2452.68Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC2_YARLI6.773e-2440.00Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UB2E2_HUMAN6.773e-2443.36Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2E2_MOUSE8.845e-2450.86Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UBC2_DEBHA2.574e-2340.91Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC31405G10EF CTVClemen1 Citrus clementina cDNA clone C31405G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875608 ID=FC875608; Name=FC875608; organism=Citrus clementina; type=EST; length=707bp
GAAAATCTTCCTGAGAAAATCAGAGGAATCATTTGCAATAACAATTTTGG
AAGATAATAGTTTAATCCAAATGGGAGTGGTGAAGATCTAGAAGGGACAA
AAATGTAAAATCAACTTCCCAAAAAAGACTAGTATTGTTTCGCATAAATA
AATAATTAAAATTAAAATTAAGTTAAAAAAAAAAAACAACTTTGATCCAT
CATTTCACTTAAACTTCTTGTATTCTATTTGCTATTCTGTTAGACTTAGA
AAACCCTATCAGCGTTCTTTCTCTGCAACAACAAGAAGGTTAAAAAACAA
AAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTCCCTCGACGTATCA
TCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACCAGGAATAAGTGCA
TCTCCCTCGGAAGATAATATGCGATACTTTAATGTGATGATCCTTGGTCC
AACACAATCTCCATATGAAGGAGGGGTGTTCAAATTGGAATTATTTTTGC
CTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATTTCTTACCAAGATA
TATCATCCTAACATTGATAAGCTTGGAAGGATTTGTCTTGATATTCTGAA
AGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACTTTTGAGCATTC
AAGCACTTCTGAGTGCTCCTACCCCGATGATCCTCTCTCTGAGACATTGC
CAAACAC
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