FC875608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23 Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 2 Query: 293 KNKKKSILEMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 670 K+ S+ N + +R+ KE L+ GISA P +N+ + I GP + Y G ++L L P YP AAP V+FLT +HPN+D G ICLDILKDKWS +RT+LLSIQ+LL P Sbjct: 19 KHSDDSMPVKDNHAVSKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEP 144
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.390e-23 Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 2 Query: 341 RRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 +RI +E + + P SA P +E+++ ++ I+GP SPY GGVF + + +YP PKV F TK+YHPNID G ICLDILK++WSPA VLLSI +LL+ P P Sbjct: 4 KRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNP 116
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23 Identity = 52/114 (45.61%), Postives = 77/114 (67.54%), Query Frame = 2 Query: 341 RRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 +RI+KE Q + +PA I+ SE ++ + LGP +PYEGG F +++ +P EYP PK++F TK+YHPNI + G ICLDILK+ WSP + +++ L+S+QALL +P P Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEP 118
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23 Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = 2 Query: 332 NLP----RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 NLP RR+ KE L S+P GI P+E+++ V I GP +PY GG+F+++L L +++P A PK FLTKI+HPN+ G IC+++LK W L IR VLL+I+ LL P P Sbjct: 7 NLPPHIIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNP 125
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22 Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 2 Query: 332 NLP----RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 NLP R++ KE L S+P GI P+E+++ V I GP +PY GG+F+++L L +++P A PK FLTKI+HPN+ G IC+++LK W L IR VLL+I+ LL P P Sbjct: 7 NLPPHIIRQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNP 125
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22 Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 2 Query: 341 RRIIKETQRLLSEPAPGISASPSEDN-MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 670 +R+ E +LLS ISA P +DN + Y+ I GP +PY G FK+ L P+ YP P ++FL+ ++HPN+DK G ICLDILK+KWS + T+LLS+Q+LL P Sbjct: 11 KRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEP 121
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22 Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 2 Query: 320 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 MAN + R R KE + I ++N I GP +PYEGG ++LE+ +PE YP PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QALL+A P Sbjct: 1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 122
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22 Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 2 Query: 320 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 MAN + R R KE + I ++N I GP +PYEGG ++LE+ +PE YP PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QALL+A P Sbjct: 1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 122
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22 Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 2 Query: 320 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 MAN + R R KE + I ++N I GP +PYEGG ++LE+ +PE YP PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QALL+A P Sbjct: 1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 122
BLAST of FC875608 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22 Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = 2 Query: 332 NLP----RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTP 676 NLP RR+ KE L S+P GI P+E+++ V I GP +PY G+F+++L L +++P A PK FLTKI+HPN+ G IC+++LK W L IR VLL+I+ LL P P Sbjct: 7 NLPPHIIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNP 125 The following BLAST results are available for this feature:
BLAST of FC875608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875608 ID=FC875608; Name=FC875608; organism=Citrus clementina; type=EST; length=707bpback to top |