FC875612

Overview
NameFC875612
Unique NameFC875612
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 2
Query:  473 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTFQMK 658
            K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T              +RG KA V F ++
Sbjct:  135 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLE 197          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 2
Query:  464 RKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            R++  QYRG+R+RPWGK+AAEIRDP K G RVWLGT+ T              +RG KAK+ F
Sbjct:   86 RQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNF 148          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 2
Query:  395 SAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTFQM 655
            S+   +  S  V+ V   KK+   +    YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +              +RG+KA + F +
Sbjct:   78 SSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPL 165          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 33/65 (50.77%), Postives = 40/65 (61.54%), Query Frame = 2
Query:  455 STERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            ST   R+  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T              +RG KAK  F
Sbjct:    3 STTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNF 67          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 2
Query:  461 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTFQM 655
            E+ ++ +YRG+R+RPWG++AAEIRDP K  RVWLG+FNT               RG KA   F +
Sbjct:   46 EKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPL 110          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 2
Query:  449 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTFQMK 658
            K S   + + +YRG+RQRPWGKWAAEIRDP +  R+WLGTF T              +RG  A   F ++
Sbjct:  106 KPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQ 175          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 2
Query:  473 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTFQMK 658
            +  YRG+R+RPWGK+AAEIRDP  KGVRVWLGTF+T              +RG KA + F ++
Sbjct:   69 QRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 2
Query:  467 KRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTFQMK 658
            + K  YRG+R RPWGK+AAEIRDPT +G RVWLGTF T              +RG KA + F ++
Sbjct:  132 EEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLE 196          
The following BLAST results are available for this feature:
BLAST of FC875612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ERF5_NICSY1.780e-1153.97Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF99_ARATH3.035e-1152.38Ethylene-responsive transcription factor 13 OS=Ara... [more]
EF107_ARATH3.035e-1139.77Ethylene-responsive transcription factor ERF107 OS... [more]
ERF81_ARATH3.964e-1150.77Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF77_ARATH6.762e-1146.15Ethylene-responsive transcription factor 10 OS=Ara... [more]
CRF4_ARATH6.762e-1144.29Ethylene-responsive transcription factor CRF4 OS=A... [more]
EF105_ARATH8.832e-1150.79Ethylene-responsive transcription factor ERF105 OS... [more]
EF103_ARATH8.832e-1149.23Ethylene-responsive transcription factor 6 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC31405H03EF CTVClemen1 Citrus clementina cDNA clone C31405H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875612 ID=FC875612; Name=FC875612; organism=Citrus clementina; type=EST; length=722bp
GAATCTCATCATTCACTAGACACTGAAGAATCCAAAACTCTCTCAAGCCA
ACAAAAGCAAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTC
TTTAGTGCCTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGG
AGGTGCTATCATTTCGGGCTACGTCCCGCCCACCGTGCCGGGCCGGCCAA
AGAAGCTGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAAC
AAGAAGTACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCA
AGGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGGACG
TTGATGCCGACTTGATGATGGCTGATATTAAGCCTTTCACTTTCTCAGCT
GGTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAA
AAAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGC
GTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTT
CGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTA
TGATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTTACTTTCC
AGATGAAACTCCTGCTGCTGCTCCAAGAGCTCAGTGAAAGCAACTCTCAG
AATCCGTTCCAAAGCTGCTAGC
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