FC875621

Overview
NameFC875621
Unique NameFC875621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15207 contig Ccv1_Contig15207:61..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875621 vs. ExPASy Swiss-Prot
Match: QOR_MOUSE (Quinone oxidoreductase OS=Mus musculus GN=Cryz PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 8.703e-11
Identity = 35/114 (30.70%), Postives = 53/114 (46.49%), Query Frame = 3 
Query:  312 PCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK 653
            P  P +D              FK GD+V  +     T  GG AEFA+A + +    P  ++  +G+ L +   TA +AL  SA  +       +++LV  ASGGVG    Q+A+
Sbjct:   66 PYTPGSDVAGIIESVGDKVSAFKKGDRVFCYS----TVSGGYAEFALAADDTIYPLPETLNFRQGAALGIPYFTACRALFHSARARAG-----ESVLVHGASGGVGLATCQIAR 170

HSP 2 Score: 37.7354 bits (86), Expect = 8.703e-11
Identity = 17/54 (31.48%), Postives = 30/54 (55.56%), Query Frame = 2 
Query:  119 GKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLLKLEATALNPVDWKVQKG 280
            G+ LM A++   +GG        ++ VP P   +VL+K+ A  +NPV+  ++ G
Sbjct:    4 GQKLMRAIRVFEFGGPEVLKLQSDVVVPVPQSHQVLIKVHACGVNPVETYIRSG 57
The following BLAST results are available for this feature:
BLAST of FC875621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
QOR_MOUSE8.703e-1130.70Quinone oxidoreductase OS=Mus musculus GN=Cryz PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31401A02EF CTVClemen1 Citrus clementina cDNA clone C31401A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875621 ID=FC875621; Name=FC875621; organism=Citrus clementina; type=EST; length=694bp
GACACTGTCACTGCGTTACATACATATTATAATCGTATGCAGAGTGGTCT
CTTTGATTCTATCGATAGCACACTCGAAATCCCAGAAACGGCATCGTGTA
TTAGCTGTGAAAATGGCAGGAAAGCCTCTTATGCACGCGGTTCAGTATAA
TTCTTATGGTGGAGGAGCTGCTGATTTGAAGCATGTTGAACTGTCGGTTC
CTACCCCAAGCAAAGATGAGGTTTTGCTTAAACTTGAAGCAACCGCTCTA
AATCCGGTTGACTGGAAAGTCCAGAAGGGCCAGTTACGCCCTTTTTTTGC
CTCGCAAGTTTCCTTGCATACCTGCAACTGATGTAGCAGGAGAGGTCGTA
GGGGTAGGATCAGAAGTTAAAATTTTCAAAGCTGGTGACAAAGTTGTAGC
TTTTCTTAACTACCTCGTAACTAATGGAGGTGGACTAGCTGAGTTTGCTG
TGGCTAAGGAGAGCTCGACAGTTACCAGGCCACCAGAGGTTTCAGCAGCT
GAAGGTTCTGGCTTACCTGTTGCTGGTCTCACTGCTCACCAGGCCCTTAC
TCAATCTGCAGGTGTCAAGCTTGATGGAAGTGGGCAACAGAAAAACATTC
TAGTAACTGCTGCCTCAGGGGGTGTAGGTCACTATGCTGTTCAGTTGGCG
AAGCTTGGAAACCGCACGTGACTGCCTCTTGTGGGGCTCGCACA
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