FC875622

Overview
NameFC875622
Unique NameFC875622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA3_CAEEL (Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21
Identity = 58/187 (31.02%), Postives = 105/187 (56.15%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 690
            Y  + +TFSP G++ Q+E+A  AV +  T + I+  NGVV+  +K + S L  +++  ++ ++  N+GV  +G  PD   L   +  +A ++ + Y+EP+P+  +    A  +   T  G  RPFG       ++ + G +L+ V+PSG  + +KA A+GK+   AK  +EK  +EE++++  V  A
Sbjct:    8 YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHT-LGISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDVNQLVKEA 193          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 56/175 (32.00%), Postives = 93/175 (53.14%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQ-TSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY 651
            Y   +T FSP G+L Q+E+A  A       SL ++  +  V+ ++KK+P  L+D ++V  I  ++  IG+V +G  PD R    +++ +A ++   Y   +P   L +  A + Q +TQ   +RP GV L     D++ GP +Y+ DP+G Y  +KA+A G       T LE  +
Sbjct:   12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHF 186          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 57/182 (31.32%), Postives = 93/182 (51.10%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELD 672
            + Y     TFSP+G+L Q+E+AL A+  G  ++G++++   V+   K+    L   S   KI     ++G+  +G+ PD RVL    R+Q      ++   + V +         Q+ TQS G RP+GV LL+ GYD  G  L +  PSG+      +A+G     AKT+LE+     +++D
Sbjct:    4 NNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL--SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKID 183          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 58/175 (33.14%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  145 LTTFSPSGKLVQIEHALTAVG-SGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGY---DDKG---PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKR 648
            +T FSP G L Q+E+A  AV  +G  ++ I+  + V++ T+  +P  L+   ++  + ++  N GV  +G  PD + LV+K+R +A +Y   Y  P+ V+ L +    + Q  TQ  G+R  G  +   G    D+ G   PQ+Y VDP+G   +  A A+GK    A  FLEK+
Sbjct:   10 ITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETITSLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAGG-AAVHACAVGKKQIEACAFLEKK 183          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA4_ENCCU (Probable proteasome subunit alpha type-4 OS=Encephalitozoon cuniculi GN=PRE9 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 59/177 (33.33%), Postives = 84/177 (47.46%), Query Frame = 1
Query:  151 TFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVE-EMELDDA 678
            TF+  G+L Q+E A+  V    T +G   S+GVV+    K P+       + KI  L+ +I  V  G+  D   L R +R +A++    +    P+T L +      Q FTQ  G RPFGVS L AG  D    L   DPSG+   WK    G+N       L+  + E EM++  A
Sbjct:   10 TFTDEGRLPQVEFAIKNVSRAGTIIGYVCSDGVVLMGVNKEPT----NGPMEKIYQLSDSIYCVLCGLFGDAMELKRYARIKAQEVLERFGVECPLTTLCKFVGQRKQAFTQYAGTRPFGVSFLYAGVIDGKYALMSTDPSGTSNRWKGMCYGENEEAINRGLKNDFPEDEMDMKTA 182          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA3_ENCCU (Probable proteasome subunit alpha type-3 OS=Encephalitozoon cuniculi GN=PRE10 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 56/186 (30.11%), Postives = 87/186 (46.77%), Query Frame = 1
Query:  148 TTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD-FRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 702
            T ++ +G++ Q+ +A  A  SG T +G+K+ +GVV+  EK   S L    S  KI+ +   IGVV +GM  D F V                ++P P    V     +   FT+   +R  G + L + Y D    L   D SG   S+KA+ +GK     KT LEK  ++ M +++ V   +  L
Sbjct:    8 TIYTTTGQIDQLSYAQKAADSGDTCIGMKSKHGVVLLAEKPRVSPLYILESDEKIRKIGNTIGVVCTGMSSDTFYVGCAIKDYVFHHKENFNEDPTPGMMKV-YLNDIFHYFTRGINLRVLGANTLTSVYKDGSFSLLHTDCSGKTLSYKAACIGKGTRRIKTELEKLDIDTMTIEEMVDVGVKVL 192          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.525e-13
Identity = 51/170 (30.00%), Postives = 79/170 (46.47%), Query Frame = 1
Query:  211 GQTSLGIKASNGVVIATEKKLP-SILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            G T++GI   +GVV ATE++     L+   +  KI  +  +I    +G   D + L++  + +A  Y     E I +       AA+      S    PF V  L+ G D+ G ++Y +DPSG     K  + G     A   LE RY +E+ +D+AV  AI  +K   E
Sbjct:    9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISI----EAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAME 174          
The following BLAST results are available for this feature:
BLAST of FC875622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA3_CAEEL1.522e-2131.02Proteasome subunit alpha type-3 OS=Caenorhabditis ... [more]
PSA6_YEAST9.862e-2132.00Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA1_YEAST1.090e-1931.32Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA1_TRYBB2.056e-1833.14Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA4_ENCCU7.314e-1633.33Probable proteasome subunit alpha type-4 OS=Enceph... [more]
PSA3_ENCCU5.242e-1430.11Probable proteasome subunit alpha type-3 OS=Enceph... [more]
PSMB_METTH1.525e-1330.00Proteasome subunit beta OS=Methanobacterium thermo... [more]

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Properties
Property NameValue
Genbank descriptionC31401A03EF CTVClemen1 Citrus clementina cDNA clone C31401A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875622 ID=FC875622; Name=FC875622; organism=Citrus clementina; type=EST; length=740bp
GGTGTCCCCCTCTTCAGAAACCTGGCACTAGAAAAGCACTGACTTTGCGA
CTCTCTCTTTCGTAAATTACCACTCTGATTTCGATTCGATCTCCGAGGCT
TTTTTAATTTAAAAAAAATGGGTGATAGTCAGTATTCGTTCTCTTTGACC
ACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCTTAACAGC
TGTTGGATCCGGCCAAACATCTCTGGGAATCAAAGCTTCTAATGGTGTTG
TCATTGCTACGGAGAAGAAACTACCGTCTATTTTGGTTGATGAATCATCT
GTTCATAAGATTCAGTCATTAACACCAAACATTGGAGTTGTATACAGTGG
GATGGGTCCCGATTTTCGGGTCCTTGTTCGAAAAAGTAGGAGGCAGGCAG
AGCAATATCACCGACTATACAAAGAGCCAATTCCTGTTACACAACTTGTA
AGAGAAACTGCTGCTGTGATGCAGGAGTTCACTCAGTCAGGTGGTGTGAG
GCCTTTTGGAGTCTCATTGCTGGTTGCAGGTTATGATGACAAAGGTCCGC
AGTTGTATCAGGTGGATCCTTCAGGTTCATATTTCTCCTGGAAAGCTTCA
GCAATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAGAAGAGGTA
TGTAGAGGAAATGGAGCTCGATGATGCTGTCCACACGGCAATATTGACAC
TAAAGGAAGGGTTTGAAGGACAGATTTCTGAAAAAACATT
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