FC875622

Overview
NameFC875622
Unique NameFC875622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.336e-38
Identity = 77/190 (40.53%), Postives = 120/190 (63.16%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 702
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RVL+  +R  A Q+  +Y EP+ +  L +  A V Q +TQ GGVRPFGV+L++AG D   P+LY  +PSG Y  ++A A+G+    A  FLEK Y E++ ++D +  A+  L
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.336e-38
Identity = 77/190 (40.53%), Postives = 120/190 (63.16%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 702
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RVL+  +R  A Q+  +Y EP+ +  L +  A V Q +TQ GGVRPFGV+L++AG D   P+LY  +PSG Y  ++A A+G+    A  FLEK Y E++ ++D +  A+  L
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.336e-38
Identity = 77/190 (40.53%), Postives = 120/190 (63.16%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 702
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RVL+  +R  A Q+  +Y EP+ +  L +  A V Q +TQ GGVRPFGV+L++AG D   P+LY  +PSG Y  ++A A+G+    A  FLEK Y E++ ++D +  A+  L
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38
Identity = 80/197 (40.61%), Postives = 126/197 (63.96%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDD--AVHTAILTLKE 708
            S+Y  ++T FSP G L Q+E+A  AV  G T++GI+ +N VV+  EKK  + L DE +V KI +L  ++ + ++G+  D RV++ ++R + + +    ++P+ V  + R  A + Q++TQS G RPFG+S L+ G+DD G P+LYQ DPSG+Y +WKA+A+G++    + FLEK Y E+    D  A+  AI  L E
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKALLE 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.985e-38
Identity = 80/192 (41.67%), Postives = 119/192 (61.98%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKE 708
            Y  ++T FSP G+L Q+E+A  AV  G T+LGIK   GVV+  +K++ S L++  S+ K+  +  +IG   +G+  D RVLV ++R +A+ Y   Y EPI V  LV+    + Q +TQ GGVRPFG +LL+AG D KG +L++ DPSG+    KA+A+G+    A    E+ Y E+M L +A+  A+  L E
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYE 201          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.985e-38
Identity = 80/197 (40.61%), Postives = 127/197 (64.47%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDD--AVHTAILTLKE 708
            S+Y  ++T FSP G L Q+E+A  AV  G T++GI+ +N VV+  EKK  + L DE +V KI +L  ++ + ++G+  D RV++ ++R + + +    ++P+ V  + R  A + Q++TQS G RPFG+S L+ G+DD G P+LYQ DPSG+Y +WKA+A+G++    + FLEK Y E+   +D  A+  AI  L E
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLE 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.160e-37
Identity = 82/201 (40.80%), Postives = 123/201 (61.19%), Query Frame = 1
Query:  115 KMGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            + G   Y  ++T FSP G+L Q+E+A  AV  G T+LG+K SNGV++ ++KK+ S L++++S+ KIQ +   +  V SG+  D RVL+  +R  A+Q    Y   + +  LV+  A  MQ++TQ GGVRP+GVSL+ AG D  GP+L+  DP+G+   +KA+A+G       +FLEK Y E +   +AV   I  LK   E
Sbjct:    2 QQGQMAYDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKEGLSEKEAVTLGIKALKASLE 202          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.978e-37
Identity = 76/190 (40.00%), Postives = 119/190 (62.63%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 702
            Y   +T FSP G+L Q+E+A  AV  G  S+G++  +GVVIA ++   S L++  S+ KI  +  ++GV  +G   D R L+  +RRQ++     Y EP  V  L +E    +Q++TQ+GG RPFGV+LLVAG +D  P+L++ DPSG+ + W+A A+G +  + +TFLE+ Y E M+L+  +  A+  L
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIEDGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRAL 198          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 81/201 (40.30%), Postives = 123/201 (61.19%), Query Frame = 1
Query:  115 KMGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            + G   Y  ++T FSP G+L Q+E+A  AV  G T+LG+K +NGV++ ++KK+ S L++++S+ KIQ +   +  V SG+  D RVLV  +R  A+Q    Y   + +  LV+  A  MQ++TQ GGVRP+GVSL+ AG D  GP+L+  DP+G+   +KA+A+G       +FLE+ Y E +   +AV   I  LK   E
Sbjct:    2 QQGQMAYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLE 202          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 78/199 (39.20%), Postives = 124/199 (62.31%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS 729
            Y   +T FSP G+L Q+E+A  AV  G  S+G++ S+GVV+A +K++ S L++ SSV KI     +IG+  +G   D R L+  +RRQA+     Y EP+ V  L +E    +Q++TQ GG RPFGV+L++ G  +  P+L++ DPSG+ + WKA A+G +  + + +LE+ Y E M+LD+ V  A+  L    + ++S
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFGVALIIGGIVNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHYDEGMDLDEGVDLALAALASVNDDELS 208          
The following BLAST results are available for this feature:
BLAST of FC875622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_SULIL2.336e-3840.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK2.336e-3840.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA2.336e-3840.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSA7L_MACFA3.052e-3840.61Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSMA_METKA3.985e-3841.67Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSA7L_MOUSE3.985e-3840.61Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSMA_THEVO1.160e-3740.80Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA2_HALMA1.978e-3740.00Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSMA_THEAC2.583e-3740.30Proteasome subunit alpha OS=Thermoplasma acidophil... [more]
PSMA1_HALMA2.583e-3739.20Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionC31401A03EF CTVClemen1 Citrus clementina cDNA clone C31401A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875622 ID=FC875622; Name=FC875622; organism=Citrus clementina; type=EST; length=740bp
GGTGTCCCCCTCTTCAGAAACCTGGCACTAGAAAAGCACTGACTTTGCGA
CTCTCTCTTTCGTAAATTACCACTCTGATTTCGATTCGATCTCCGAGGCT
TTTTTAATTTAAAAAAAATGGGTGATAGTCAGTATTCGTTCTCTTTGACC
ACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCTTAACAGC
TGTTGGATCCGGCCAAACATCTCTGGGAATCAAAGCTTCTAATGGTGTTG
TCATTGCTACGGAGAAGAAACTACCGTCTATTTTGGTTGATGAATCATCT
GTTCATAAGATTCAGTCATTAACACCAAACATTGGAGTTGTATACAGTGG
GATGGGTCCCGATTTTCGGGTCCTTGTTCGAAAAAGTAGGAGGCAGGCAG
AGCAATATCACCGACTATACAAAGAGCCAATTCCTGTTACACAACTTGTA
AGAGAAACTGCTGCTGTGATGCAGGAGTTCACTCAGTCAGGTGGTGTGAG
GCCTTTTGGAGTCTCATTGCTGGTTGCAGGTTATGATGACAAAGGTCCGC
AGTTGTATCAGGTGGATCCTTCAGGTTCATATTTCTCCTGGAAAGCTTCA
GCAATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAGAAGAGGTA
TGTAGAGGAAATGGAGCTCGATGATGCTGTCCACACGGCAATATTGACAC
TAAAGGAAGGGTTTGAAGGACAGATTTCTGAAAAAACATT
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