FC875622

Overview
NameFC875622
Unique NameFC875622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.310e-36
Identity = 77/199 (38.69%), Postives = 124/199 (62.31%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD--DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            ++Y  ++T FSP G L Q+E+AL AV  G  ++G++ ++ VV+  EKK    L D  S+ KI SL  +I +  +G+  D RVL+ ++R + + +    ++P+ V  + R  A + Q++TQSGGVRPFG+S L+ G+D   + P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y ++    + +  AI  L E  E
Sbjct:    2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KDTSGKETIKLAIRALLEVVE 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 8.310e-36
Identity = 77/199 (38.69%), Postives = 124/199 (62.31%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD--DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            ++Y  ++T FSP G L Q+E+AL AV  G  ++G++ ++ VV+  EKK    L D  S+ KI SL  +I +  +G+  D RVL+ ++R + + +    ++P+ V  + R  A + Q++TQSGGVRPFG+S L+ G+D   + P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y ++    + +  AI  L E  E
Sbjct:    2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KDTSGKETIKLAIRALLEVVE 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.418e-35
Identity = 73/192 (38.02%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLK 705
            Y  ++T FSP G L Q+E+A  A+  G T++G++  + VV+  EKK  + L DE +V KI +L  N+ + ++G+  D R+++ ++R + + +    ++ + V  + R  A++ Q +TQS G RPFG+S L+ G+D D  P+LYQ DPSG+Y +WKA+A+G+   + + FLEK Y      D+A+ T  LT+K
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAIKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT-----DEAIETDDLTIK 189          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.418e-35
Identity = 79/195 (40.51%), Postives = 124/195 (63.59%), Query Frame = 1
Query:  130 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDES-SVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKE 708
            +Y    T FSP G+L Q+E+A+ A+G+  +++GI A +GVV+  EKK+ S L+  S S  K+  +  ++    +G+  D  +L+  +R QA++Y   Y+EP+PV QLV+      Q +TQ GG+RPFGVS L AG+D + G QLY  DPSG+Y  WKA+A+G N   A++ L++ Y +++  +DAV  A+  L +
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDDVTREDAVKLALKALSK 198          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.851e-35
Identity = 73/196 (37.24%), Postives = 124/196 (63.27%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD--DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKE 708
            S Y  +L+ FSP G+L+Q+E+   AV  G T++ ++ +  +VI  E+K    L + S+  KI  +  ++ + ++G+  D R+L+ K+R +A+ +     +P+ +  L R  A V Q++TQSGGVRPFGVS L+AG+D  D  P++YQ +P+G Y +WKA+A+G+    A+ +LEK + E +  D+ +H A+ +L E
Sbjct:    2 SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLAVSSLLE 197          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.418e-35
Identity = 77/199 (38.69%), Postives = 117/199 (58.79%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS 729
            Y   +T FSP G+L Q+E+A  AV  G  S+G++   GVV+  +K+  S L++ SSV K+  +  ++G   +G   D R LV  +R+Q++     Y EPI V  L +     +Q++TQ GG RPFGV+LL+AG +   P+L++ DPSG+   WKA A+G N  + + FLE  Y   + +DD +  A+  L EG E  +S
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNEGREDALS 208          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.418e-35
Identity = 77/199 (38.69%), Postives = 117/199 (58.79%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS 729
            Y   +T FSP G+L Q+E+A  AV  G  S+G++   GVV+  +K+  S L++ SSV K+  +  ++G   +G   D R LV  +R+Q++     Y EPI V  L +     +Q++TQ GG RPFGV+LL+AG +   P+L++ DPSG+   WKA A+G N  + + FLE  Y   + +DD +  A+  L EG E  +S
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNEGREDALS 208          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.418e-35
Identity = 79/203 (38.92%), Postives = 125/203 (61.58%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGV------VYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDD--AVHTAILTLKE 708
            S+Y  ++T FSP G L Q+E+A  AV  G T++GI+ +N VV+  EKK  + L DE +V KI +L  ++ +      ++ G+  D RV++ ++R + + +    ++P+ V  + R  A + Q++TQS G RPFG+S L+ G+DD G  +LYQ DPSG+Y +WKA+A+G++    + FLEK Y E+    D  A+  AI  L E
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLE 205          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.158e-35
Identity = 76/197 (38.58%), Postives = 118/197 (59.90%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            S Y  ++T FSP G+L Q+E+A  AV  G T++GI   +GVV+A ++++ S LV   S+ KI  +  ++    SG+  D RVL+ ++R +A+ Y   Y E I +  L ++   + Q +TQ GGVRPFGVSLL+AG D    +L++ DPSG+   +KA+A+G         LEK Y +++ LD+ +  AI  L +  E
Sbjct:    7 SAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANE 203          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.124e-35
Identity = 77/198 (38.89%), Postives = 121/198 (61.11%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVY------SGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLK 705
            Y  ++T FSP G L Q+E+A  AV  G T++G++  + VV+  EKK  + L DE +V KI +L  N+ + +      SG+  D R+++ ++R + + +     +P+ V  + R  A++ Q +TQS G RPFG+S L+ G+D D  P+LYQ DPSG+Y +WKA+A+G+   + + FLEK Y      DDA+ T  LT+K
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT-----DDAIETDDLTIK 195          
The following BLAST results are available for this feature:
BLAST of FC875622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA7A_ORYSJ8.310e-3638.69Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ORYSI8.310e-3638.69Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7_PONAB1.418e-3538.02Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]
PSA4_SPIOL1.418e-3540.51Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSA7_SCHPO1.851e-3537.24Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSMA_HALSA2.418e-3538.69Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS32.418e-3538.69Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSA7L_HUMAN2.418e-3538.92Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSMA_METJA3.158e-3538.58Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSA7_RAT4.124e-3538.89Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC31401A03EF CTVClemen1 Citrus clementina cDNA clone C31401A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875622 ID=FC875622; Name=FC875622; organism=Citrus clementina; type=EST; length=740bp
GGTGTCCCCCTCTTCAGAAACCTGGCACTAGAAAAGCACTGACTTTGCGA
CTCTCTCTTTCGTAAATTACCACTCTGATTTCGATTCGATCTCCGAGGCT
TTTTTAATTTAAAAAAAATGGGTGATAGTCAGTATTCGTTCTCTTTGACC
ACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCTTAACAGC
TGTTGGATCCGGCCAAACATCTCTGGGAATCAAAGCTTCTAATGGTGTTG
TCATTGCTACGGAGAAGAAACTACCGTCTATTTTGGTTGATGAATCATCT
GTTCATAAGATTCAGTCATTAACACCAAACATTGGAGTTGTATACAGTGG
GATGGGTCCCGATTTTCGGGTCCTTGTTCGAAAAAGTAGGAGGCAGGCAG
AGCAATATCACCGACTATACAAAGAGCCAATTCCTGTTACACAACTTGTA
AGAGAAACTGCTGCTGTGATGCAGGAGTTCACTCAGTCAGGTGGTGTGAG
GCCTTTTGGAGTCTCATTGCTGGTTGCAGGTTATGATGACAAAGGTCCGC
AGTTGTATCAGGTGGATCCTTCAGGTTCATATTTCTCCTGGAAAGCTTCA
GCAATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAGAAGAGGTA
TGTAGAGGAAATGGAGCTCGATGATGCTGTCCACACGGCAATATTGACAC
TAAAGGAAGGGTTTGAAGGACAGATTTCTGAAAAAACATT
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