FC875624

Overview
NameFC875624
Unique NameFC875624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: BSAA_STAES (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=bsaA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.238e-32
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P     GQEPGS EE  +     +   FPI +K+DV G N  P++ FL +   G + + IKWNFTKFL+++EG V++R++P   P +I+ +I+ LL
Sbjct:   63 PCNQFGGQEPGSGEEAAQNCKINYGVTFPIHEKVDVKGDNQHPLFHFLTNAAKGMINEKIKWNFTKFLIDREGNVIKRFSPQKKPEQIKTEIEKLL 158          

HSP 2 Score: 67.781 bits (164), Expect = 7.238e-32
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +SIYDF V+   G    L  Y+G V+L+VN AS+CG T   ++ L  LY++YK+Q F +L FPCNQ
Sbjct:    2 ESIYDFVVQKNNGESYKLEQYKGDVMLIVNTASECGFT-PQFEGLQKLYDEYKDQRFIILGFPCNQ 66          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX41_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Mus musculus GN=Gpx4 PE=1 SV=4)

HSP 1 Score: 91.2781 bits (225), Expect = 3.506e-31
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE-KG-GFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPGSN+EI+E A   +  +F ++ KI VNG +A P++K++K + KG G LG+AIKWNFTKFL++K G VV+RY P   P  IEKD+
Sbjct:  101 PCNQFGRQEPGSNQEIKEFAAG-YNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          

HSP 2 Score: 65.0846 bits (157), Expect = 3.506e-31
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +S+++FS KDI G+ V L  YRG V +V NVAS+ G T  NY +L  L+ +Y      +LAFPCNQ
Sbjct:   39 RSMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQ 104          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_PIG (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Sus scrofa GN=GPX4 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.506e-31
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE-KG-GFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPGS+ EI+E A   +  +F +F KI VNG +A P++K++K + KG G LG+AIKWNFTKFL++K G VV+RY P   P  IEKD+
Sbjct:  101 PCNQFGRQEPGSDAEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          

HSP 2 Score: 67.0106 bits (162), Expect = 3.506e-31
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +S+++FS KDI G+ V+L  YRG V +V NVAS+ G T+ NY +L  L+ +Y      +LAFPCNQ
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGYVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQ 104          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX42_RAT (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Rattus norvegicus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.002e-30
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE-KG-GFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPGSN+EI+E A   +   F ++ KI VNG +A P++K++K + KG G LG+AIKWNFTKFL++K G VV+RY P   P  IEKD+
Sbjct:  157 PCNQFGRQEPGSNQEIKEFAAG-YNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 249          

HSP 2 Score: 63.929 bits (154), Expect = 1.002e-30
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +S+++F+ KDI G+ V L  YRG V +V NVAS+ G T  NY +L  L+ +Y      +LAFPCNQ
Sbjct:   95 RSMHEFAAKDIDGHMVCLDKYRGCVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQ 160          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX41_RAT (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Rattus norvegicus GN=Gpx4 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.008e-30
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE-KG-GFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPGSN+EI+E A   +   F ++ KI VNG +A P++K++K + KG G LG+AIKWNFTKFL++K G VV+RY P   P  IEKD+
Sbjct:  101 PCNQFGRQEPGSNQEIKEFAAG-YNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          

HSP 2 Score: 63.929 bits (154), Expect = 1.008e-30
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +S+++F+ KDI G+ V L  YRG V +V NVAS+ G T  NY +L  L+ +Y      +LAFPCNQ
Sbjct:   39 RSMHEFAAKDIDGHMVCLDKYRGCVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQ 104          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX42_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Mus musculus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.752e-30
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE-KG-GFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPGSN+EI+E A   +  +F ++ KI VNG +A P++K++K + KG G LG+AIKWNFTKFL++K G  V+RY P   P  IE+D+
Sbjct:  157 PCNQFGRQEPGSNQEIKEFAAG-YNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCEVKRYGPMEEPQVIERDL 249          

HSP 2 Score: 65.0846 bits (157), Expect = 3.752e-30
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +S+++FS KDI G+ V L  YRG V +V NVAS+ G T  NY +L  L+ +Y      +LAFPCNQ
Sbjct:   95 RSMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQ 160          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.726e-30
Identity = 61/97 (62.89%), Postives = 75/97 (77.32%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 625
            P      QEPG+NEEI +  CT FK+EFPIFDKIDVNG+NAAP+Y+FLK+   G LG  I+WNF+KFLV+K G+ V+ Y PTTSPL +E+DIQ LLG
Sbjct:   69 PCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYGILGGDIQWNFSKFLVDKNGQPVDCYYPTTSPLTVERDIQKLLG 165          

HSP 2 Score: 105.145 bits (261), Expect = 3.320e-22
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 3
Query:  129 MATQEAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQDRSQEAMRKFRKLHAQCSKLNSQ 422
            MATQ + K++YDF+VKD +GNDV LS Y+GKV+L+VNVASKCGLT ++Y ELN +Y KYK + FE+LAFPCNQ     QE       +   C+K  S+
Sbjct:    1 MATQ-SKKTLYDFTVKDAKGNDVDLSVYKGKVVLIVNVASKCGLTNNSYDELNQIYLKYKEKGFEILAFPCNQF--GQQEPGTNEEIVDFVCTKFKSE 95          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_CHLRE (Glutathione peroxidase 1, mitochondrial OS=Chlamydomonas reinhardtii GN=GPX PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.362e-28
Identity = 48/100 (48.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACT--MFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLGS 628
            P     GQEPG+N EI+  A       A   + DK+DVNG NA+P+Y FLK   G      I WNF KFLV  +G V  RYAPTT PL +EK I  L+ S
Sbjct:  103 PCNQFGGQEPGTNAEIKAFASARGFSGAGALLMDKVDVNGANASPVYNFLKVAAGDT--SDIGWNFGKFLVRPDGTVFGRYAPTTGPLSLEKYIVELINS 200          

HSP 2 Score: 61.2326 bits (147), Expect = 4.362e-28
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            + +  S  DI   +V       +V+LVVNVASK GLT +NYKE   L  KY   D  ++AFPCNQ
Sbjct:   42 NFHQLSALDIDKKNVDFKSLNNRVVLVVNVASKUGLTAANYKEFATLLGKYPATDLTIVAFPCNQ 106          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: BTUE_ECOLI (Vitamin B12 transport periplasmic protein btuE OS=Escherichia coli (strain K12) GN=btuE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.812e-24
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFL--------KSEKGGFLG------------DAIKWNFTKFLVNKEGKVVERYAPTTSP 589
            P      QEPGS+EEI+    T +   FP+F KI+VNG+   P+Y+ L          E+ GF              D I WNF KFLV ++GKV++R++P  +P
Sbjct:   64 PCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQRFSPDMTP 168          

HSP 2 Score: 60.4622 bits (145), Expect = 9.812e-24
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQDR 359
            SI    VKDI G   +L  + G VLL+VNVASKCGLT   Y++L  + + + ++ F VL FPCNQ  ++
Sbjct:    4 SILTTVVKDIDGEVTTLEKFAGNVLLIVNVASKCGLT-PQYEQLENIQKAWVDRGFMVLGFPCNQFLEQ 71          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX8B_XENLA (Probable glutathione peroxidase 8-B OS=Xenopus laevis GN=gpx8-B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.272e-23
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 3
Query:  159 YDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            Y + V D +G  V+LS YRGK  LVVNVAS C  T++NY+ L  L+ ++    F VLAFPCNQ
Sbjct:   48 YSYEVTDAKGRTVALSKYRGKASLVVNVASGCPHTEANYRSLQELHREFGPSHFTVLAFPCNQ 110          

HSP 2 Score: 61.2326 bits (147), Expect = 1.272e-23
Identity = 31/96 (32.29%), Postives = 51/96 (53.12%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P       EPG+N+EI+ +A   +   FP+F KI + G  A P Y+FL            +WNF K+LV+ +G+VV+ + P  +   I  ++ +L+
Sbjct:  107 PCNQFGESEPGTNKEIEAMAKRNYGVTFPVFSKIKILGSEAEPAYRFLVDS----TKKEPRWNFWKYLVDPQGQVVKYWRPDETAESIRPEVASLV 198          
The following BLAST results are available for this feature:
BLAST of FC875624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
BSAA_STAES7.238e-3241.67Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX41_MOUSE3.506e-3151.06Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_PIG3.506e-3151.06Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX42_RAT1.002e-3051.06Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX41_RAT1.008e-3051.06Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX42_MOUSE3.752e-3048.94Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX1_HELAN9.726e-3062.89Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX1_CHLRE4.362e-2848.00Glutathione peroxidase 1, mitochondrial OS=Chlamyd... [more]
BTUE_ECOLI9.812e-2437.14Vitamin B12 transport periplasmic protein btuE OS=... [more]
GPX8B_XENLA1.272e-2352.38Probable glutathione peroxidase 8-B OS=Xenopus lae... [more]

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Properties
Property NameValue
Genbank descriptionC31401A05EF CTVClemen1 Citrus clementina cDNA clone C31401A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875624 ID=FC875624; Name=FC875624; organism=Citrus clementina; type=EST; length=670bp
ATTTCTGTTATAAATGACGTATGACATTGCGTTTGATGAAAAATAGCAAC
TGGGTTTCATTCCTTTTTATTGTGTTCGCATTTTTCTTGTATTTTTACAA
ATACCCATCTTCTTTTTCTGCAAAGAATATGGCTACGCAAGAGGCTCCCA
AGTCCATCTATGACTTCTCTGTCAAGGATATTCGTGGAAATGATGTGAGT
CTAAGTGGGTACCGTGGGAAGGTTCTCCTGGTAGTGAATGTTGCTTCCAA
ATGTGGCTTAACGCAATCTAACTATAAGGAACTGAATGTTTTGTATGAAA
AATACAAAAACCAAGACTTTGAGGTCCTTGCGTTCCCTTGCAACCAGTTG
CAGGACAGGAGCCAGGAAGCAATGAGGAAATTCAGGAAGTTGCATGCACA
ATGTTCAAAGCTGAATTCCCAATCTTTGATAAGATTGATGTGAATGGAAA
GAATGCGGCACCTATTTACAAGTTTCTAAAATCAGAGAAAGGAGGATTCC
TTGGAGATGCAATCAAGTGGAATTTTACCAAGTTTCTGGTTAATAAAGAA
GGGAAGGTTGTAGAGAGATATGCTCCTACAACATCACCTCTTAAGATCGA
GAAAGACATACAAAATCTGCTGGGATCATGTTGAATACAAGGATGCTGTG
AAGATCCAATTTCATGATGT
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