FC875624

Overview
NameFC875624
Unique NameFC875624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX8_HUMAN (Probable glutathione peroxidase 8 OS=Homo sapiens GN=GPX8 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.770e-22
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            S Y F VKD +G  VSL  Y+GKV LVVNVAS C LT  NY  L  L++++    F VLAFPCNQ
Sbjct:   46 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQ 110          

HSP 2 Score: 53.1434 bits (126), Expect = 1.770e-22
Identity = 31/96 (32.29%), Postives = 45/96 (46.88%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P       EP  ++E++  A   +   FPIF KI + G    P ++FL            +WNF K+LVN EG+VV+ + P      I  DI  L+
Sbjct:  107 PCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALV 198          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX8A_XENLA (Probable glutathione peroxidase 8-A OS=Xenopus laevis GN=gpx8-A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.303e-22
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 3
Query:  159 YDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            Y + V D +G  V+LS YRGK  LVVNVAS C   ++NY+ L  L+ ++    F VLAFPCNQ
Sbjct:   48 YSYEVTDAKGRAVALSKYRGKASLVVNVASGCPHAEANYRSLQELHREFGPSHFTVLAFPCNQ 110          

HSP 2 Score: 59.3066 bits (142), Expect = 2.303e-22
Identity = 31/96 (32.29%), Postives = 50/96 (52.08%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P       EPG+N+EI  +A   +   FP+F KI + G  A P Y+FL            +WNF K+LV+ +G+VV+ + P  +   I  ++ +L+
Sbjct:  107 PCNQFGESEPGTNQEIGALAKRNYGVTFPMFSKIKILGSEAEPAYRFLVDS----TKKEPRWNFWKYLVDPQGQVVKYWRPDETAESIRPEVASLV 198          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX8_BOVIN (Probable glutathione peroxidase 8 OS=Bos taurus GN=GPX8 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.600e-22
Identity = 36/65 (55.38%), Postives = 42/65 (64.62%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            S Y F VKD  G  VSL  ++GKV LVVNVAS C LT  NY  L  L++++    F VLAFPCNQ
Sbjct:   46 SFYTFEVKDANGRVVSLEKFKGKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQ 110          

HSP 2 Score: 54.299 bits (129), Expect = 6.600e-22
Identity = 32/96 (33.33%), Postives = 45/96 (46.88%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P       EP  ++E+   A   F   FPIF KI + G  A P ++FL            +WNF K+LVN EG+VV+ + P      I  +I  L+
Sbjct:  107 PCNQFGESEPRPSKEVVSFARNNFGVTFPIFHKIKILGSEAEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKTWRPEEPIEVIRPEIAALI 198          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX8_TETNG (Probable glutathione peroxidase 8 OS=Tetraodon nigroviridis GN=gpx8 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.453e-21
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = 3
Query:  147 PKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQDRSQEAMR 377
            P   Y F VKD +G  VSL  YRGK  LVVNVAS+   T+SNY+ L  L+ +     F VLAFPC Q  +    + R
Sbjct:   45 PSDFYSFEVKDAKGRTVSLEKYRGKASLVVNVASRSEQTESNYRSLQELHRELGPSHFNVLAFPCAQFGETETGSSR 121          

HSP 2 Score: 53.1434 bits (126), Expect = 1.453e-21
Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 2
Query:  359 EPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLK-IEKDIQNLL 622
            E GS+ + +  A   +   FP F +I + G  A P ++FL       +    +WNF KFLVN EGKVV R+  T  P++ I +++  L+
Sbjct:  116 ETGSSRDSEAFAKATYGVTFPFFSRIKIMGSEAEPAFRFLTDS----VQKVPRWNFWKFLVNPEGKVV-RFWRTDEPMESIRREVTALV 199          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX3_YEAST (Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=HYR1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.253e-21
Identity = 51/97 (52.58%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLG-DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QEPGS+EEI +     +   FPI  KIDVNG N  P+YKFLKS+K G LG   IKWNF KFLV+K+GKV ERY+  T P  + + I+ LL
Sbjct:   63 PCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL 159          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: BSAA_BACSU (Glutathione peroxidase homolog bsaA OS=Bacillus subtilis GN=bsaA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLG-DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QEPG   +IQE   T +   FP+F K+DVNGKNA P++ +L     G LG  AIKWNFTKF+V++ G++V RY+P T+P ++E DI  LL
Sbjct:   62 PCNQFMNQEPGEEADIQEFCETNYGVTFPMFSKVDVNGKNAHPLFVYLTEHAKGMLGTKAIKWNFTKFIVDRNGEIVGRYSPNTNPKELEDDIVKLL 158          

HSP 2 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQL--QDRSQEA 371
            SIY   V+ I G D++L  + GKVL++VN ASKCG T S  K+L  LY+ Y+ +  E+L FPCNQ   Q+  +EA
Sbjct:    2 SIYHMKVRTITGKDMTLQPFAGKVLMIVNTASKCGFT-SQLKQLQELYDTYQQEGLEILGFPCNQFMNQEPGEEA 75          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX2_YEAST (Glutathione peroxidase 2 OS=Saccharomyces cerevisiae GN=GPX2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.349e-20
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLG-DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QEPGS+E+I E     +   FPI  KIDVNG NA  +Y +LKS+K G LG   IKWNF KFLV+  GKVV+R++  T P  ++++IQ+LL
Sbjct:   64 PCNQFGKQEPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGLLGFKGIKWNFEKFLVDSNGKVVQRFSSLTKPSSLDQEIQSLL 160          

HSP 2 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQL---QDRSQEAMRKFRKLH 395
            S YD   KD +G        +GKV+L+VNVASKCG T   YKEL  LY+KY+++ F +L FPCNQ    +  S E + +F +L+
Sbjct:    4 SFYDLECKDKKGESFKFDQLKGKVVLIVNVASKCGFT-PQYKELEELYKKYQDKGFVILGFPCNQFGKQEPGSDEQITEFCQLN 86          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_SCHMA (Glutathione peroxidase OS=Schistosoma mansoni GN=GPX1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P     GQEP +  EI++     +  +F +F KI VNG +A  +YKFLKS + G L + IKWNF+KFLV+++G+ V+RY+PTT+P  IE DI  LL
Sbjct:   71 PCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166          

HSP 2 Score: 77.0258 bits (188), Expect = 9.683e-14
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQDRSQEAMRKFRK 389
            SIY+F+VKDI G DVSL  YRG V L+VNVA K G T  NY++L  ++ +   +   +LAFPCNQ   +   A  + +K
Sbjct:   10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKUGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKK 88          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_PONPY (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Pongo pygmaeus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE-KG-GFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPGSNEEI+E A   +  +F +F KI VNG +A P++K++K + KG G LG+AIKWNFTKFL++K G VV+RY P   PL IEKD+
Sbjct:  101 PCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          

HSP 2 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQL---QDRSQEAMRKF 383
            +S+++FS KDI G+ V+L  YRG V +V NVAS+ G T+ NY +L  L+ +Y      +LAFPCNQ    +  S E +++F
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF 119          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_HUMAN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Homo sapiens GN=GPX4 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE-KG-GFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPGSNEEI+E A   +  +F +F KI VNG +A P++K++K + KG G LG+AIKWNFTKFL++K G VV+RY P   PL IEKD+
Sbjct:  101 PCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          

HSP 2 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQL---QDRSQEAMRKF 383
            +S+++FS KDI G+ V+L  YRG V +V NVAS+ G T+ NY +L  L+ +Y      +LAFPCNQ    +  S E +++F
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF 119          
The following BLAST results are available for this feature:
BLAST of FC875624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX8_HUMAN1.770e-2256.92Probable glutathione peroxidase 8 OS=Homo sapiens ... [more]
GPX8A_XENLA2.303e-2250.79Probable glutathione peroxidase 8-A OS=Xenopus lae... [more]
GPX8_BOVIN6.600e-2255.38Probable glutathione peroxidase 8 OS=Bos taurus GN... [more]
GPX8_TETNG1.453e-2146.75Probable glutathione peroxidase 8 OS=Tetraodon nig... [more]
GPX3_YEAST8.253e-2152.58Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=... [more]
BSAA_BACSU2.401e-2048.45Glutathione peroxidase homolog bsaA OS=Bacillus su... [more]
GPX2_YEAST5.349e-2049.48Glutathione peroxidase 2 OS=Saccharomyces cerevisi... [more]
GPX1_SCHMA1.556e-1947.92Glutathione peroxidase OS=Schistosoma mansoni GN=G... [more]
GPX4_PONPY2.033e-1954.26Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HUMAN2.033e-1954.26Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionC31401A05EF CTVClemen1 Citrus clementina cDNA clone C31401A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875624 ID=FC875624; Name=FC875624; organism=Citrus clementina; type=EST; length=670bp
ATTTCTGTTATAAATGACGTATGACATTGCGTTTGATGAAAAATAGCAAC
TGGGTTTCATTCCTTTTTATTGTGTTCGCATTTTTCTTGTATTTTTACAA
ATACCCATCTTCTTTTTCTGCAAAGAATATGGCTACGCAAGAGGCTCCCA
AGTCCATCTATGACTTCTCTGTCAAGGATATTCGTGGAAATGATGTGAGT
CTAAGTGGGTACCGTGGGAAGGTTCTCCTGGTAGTGAATGTTGCTTCCAA
ATGTGGCTTAACGCAATCTAACTATAAGGAACTGAATGTTTTGTATGAAA
AATACAAAAACCAAGACTTTGAGGTCCTTGCGTTCCCTTGCAACCAGTTG
CAGGACAGGAGCCAGGAAGCAATGAGGAAATTCAGGAAGTTGCATGCACA
ATGTTCAAAGCTGAATTCCCAATCTTTGATAAGATTGATGTGAATGGAAA
GAATGCGGCACCTATTTACAAGTTTCTAAAATCAGAGAAAGGAGGATTCC
TTGGAGATGCAATCAAGTGGAATTTTACCAAGTTTCTGGTTAATAAAGAA
GGGAAGGTTGTAGAGAGATATGCTCCTACAACATCACCTCTTAAGATCGA
GAAAGACATACAAAATCTGCTGGGATCATGTTGAATACAAGGATGCTGTG
AAGATCCAATTTCATGATGT
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