FC875627

Overview
NameFC875627
Unique NameFC875627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.776e-20
Identity = 66/201 (32.84%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTH-----NXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKK----GSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASG 720
            ++A +AEF +TLL V   V + I   + + +     +G++ IA   G  +FV V   A ISGGH+NPAVTF + L  ++++     Y +AQ +G++  + L + + GG     H                       TF LVYTV+ +A DPK+      +  +AP+ IG  V    LA  P +G  +NP RS GPA+  G
Sbjct:   34 YRAAIAEFTATLLLVCISVSTVIGEKRQSGEGG---AGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVF-SATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLG 230          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP8_NOTAL (Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.776e-20
Identity = 72/211 (34.12%), Postives = 102/211 (48.34%), Query Frame = 1
Query:  112 GRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT--------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASG 720
            GRF  S+     +  + E + + LF+F G  S I  +  T        GL+  A+ HG AL + +A   NISGGH NPAV+  + + G +  +  I YWI+Q+ G ++ + L KVV+         G A                      T  LV  V   A + K  ++G +AP +IGF V  +ILA G  SG  MNP R+FGPAV +G
Sbjct:   24 GRFRVSWYEQYIQPCVVELLGSALFIFIGCLSVIENSPDT--------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTVIGGLKTMLLIPYWISQIFGGLIGAALAKVVSPEERFWNASGAAFAI--VQEQEQVTEALGVEIILTILLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVVAG 222          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.776e-20
Identity = 70/205 (34.15%), Postives = 104/205 (50.73%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            S+   +A LAEF++TLLFVF G+GSA+ + +        PS ++ IA+  G A+   V    ++SG H+NPAVT    +G  ++ L  +FY  AQLLG++  + LL  +T     G LAV   N                 T  LV  ++  + D ++G       ++IGF V    L    ++G SMNP RS  PA+ +G F D
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSALNWPQAL------PS-VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAIRGDLAVNALN--NNSTAGQAVTVELFLTLQLVLCIF-PSTDKRRGKQLGHPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGKFDD 200          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.932e-20
Identity = 68/194 (35.05%), Postives = 95/194 (48.97%), Query Frame = 1
Query:  160 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-----TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            AEF+ T + +F    + I   K     A+ P G  A   C G A+   +    +ISG H+NP++T   A       L    Y   Q L S+ A+F LK V     +GG+ VP                    +F L++ V A A D +  ++G +A IA+G  V  NIL AGP +GGSMNP R+ GPAVA+GN+
Sbjct:   78 AEFVGTFILIFFATAAPIVNQKY--GGAISPFGNAA---CAGLAVATVILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQALASVCAAFALKGVFHPFLSGGVTVPDATVSTAQAFFTEFII----SFNLLFVVTAVATDTR--AVGELAGIAVGAAVTLNILVAGPTTGGSMNPVRTLGPAVAAGNY 260          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP8_MOUSE (Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.932e-20
Identity = 69/196 (35.20%), Postives = 96/196 (48.98%), Query Frame = 1
Query:  157 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT--------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASG 720
            + E + + LF+F G  S I  +  T        GL+  A+ HG AL + +A   NISGGH NPAV+  + + G +  +  I YWI+QL G ++ + L KVV+         G A                      T  LV  V   A + K  ++G +AP +IGF V  +ILA G  SG  MNP R+FGPAV +G
Sbjct:   39 IVELVGSALFIFIGCLSVIENSPNT--------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTVIGGLKTMLLIPYWISQLFGGLIGAALAKVVSPEERFWNASGAAFAI--VQEQEQVAEALGIEIILTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGSISGACMNPARAFGPAVMAG 222          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.441e-20
Identity = 66/197 (33.50%), Postives = 102/197 (51.78%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPT----HNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEF++T LF++  + + +  NK  +  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY   Q LG+I  + ++K    GL + +    +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP RS G A+
Sbjct:   53 YRAGIAEFVATFLFLYISILTVMGVNKSASKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 246          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.441e-20
Identity = 69/197 (35.03%), Postives = 103/197 (52.28%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEF++T LF++  V + +  +K T+  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   IFY I Q LG+I  + ++K    GL +      +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP RS G A+
Sbjct:   57 YRAGIAEFVATFLFLYITVLTVMGVSKSTSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 250          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 6.441e-20
Identity = 68/197 (34.52%), Postives = 102/197 (51.78%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPT----HNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEF++T LF++  V + +  N  T+  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG+I  + ++K    GL   T    +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP RS G A+
Sbjct:   53 YRAGIAEFMATFLFLYITVLTVMGVNNSTSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 246          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP8_RAT (Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.441e-20
Identity = 69/196 (35.20%), Postives = 96/196 (48.98%), Query Frame = 1
Query:  157 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT--------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASG 720
            + E + + LF+F G  S I  +  T        GL+  A+ HG AL + +A   NISGGH NPAV+  + L G +  +  I YW++QL G ++ + L KVV+         G A                      T  LV  V   A + K  ++G +AP +IGF V  +ILA G  SG  MNP R+FGPAV +G
Sbjct:   41 VVELLGSALFIFIGCLSVIENSPNT--------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTLVGGLKTMLLIPYWVSQLFGGMIGAALAKVVSPEERFWNASGAAFAI--VQEQEQVAEALGVEIVMTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVMAG 224          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.441e-20
Identity = 71/205 (34.63%), Postives = 105/205 (51.22%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            S+   +A  AEF++TLLFVF G+GSA+ + +        PS ++ IA+  G  +   V    +ISG H+NPAVT    +G  +++L   FY  AQLLG++  + LL  +T     G LAV  +                  T  LV  ++A+  + +  + GT A ++IGF V    L    ++G SMNP RS  PAV +G F D
Sbjct:    6 SIAFSRAVFAEFLATLLFVFFGLGSALNWPQAL------PS-VLQIAMAFGLGIGTLVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPADIRGDLAV--NALSNSTTAGQAVTVELFLTLQLVLCIFASTDERRGENPGTPA-LSIGFSVALGHLLGIHYTGCSMNPARSLAPAVVTGKFDD 200          
The following BLAST results are available for this feature:
BLAST of FC875627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
PIP28_ORYSJ3.776e-2032.84Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
AQP8_NOTAL3.776e-2034.12Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1[more]
AQP2_SHEEP3.776e-2034.15Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
NIP31_MAIZE4.932e-2035.05Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
AQP8_MOUSE4.932e-2035.20Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1[more]
PIP13_ORYSJ6.441e-2033.50Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP13_MAIZE6.441e-2035.03Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ6.441e-2034.52Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
AQP8_RAT6.441e-2035.20Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1[more]
AQP2_HUMAN6.441e-2034.63Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401A08EF CTVClemen1 Citrus clementina cDNA clone C31401A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875627 ID=FC875627; Name=FC875627; organism=Citrus clementina; type=EST; length=743bp
GCTCGACCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACTCGA
GAGAGTTTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATGG
CTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAAG
GCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCGT
TGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGATC
CATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGTC
GCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCGT
CACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCT
TCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCTC
AAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTGG
AGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTT
TGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTG
GGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCT
GGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGNCCGTTCCTTCG
GGCCTGCCGTTGCCAGCGGCAACTTCCCAGACACTGGATCTAC
back to top