FC875627

Overview
NameFC875627
Unique NameFC875627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 68/201 (33.83%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK--------VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEFI+T LF++  V + +   +     A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG+I  + ++K           GG  V  H                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP RS G A+
Sbjct:   52 YRAGIAEFIATFLFLYVTVLTVMGVKRAPNMCA--SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHG----YTKGSGLGAEIVGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 245          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 67/201 (33.33%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK--------VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEFI+T LF++  V + +   +     A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG+I  + ++K         + GG     H                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP RS G A+
Sbjct:   51 YRAGIAEFIATFLFLYITVLTVMGVKRAPNMCA--SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHG----YTKGSGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 244          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 68/198 (34.34%), Postives = 100/198 (50.51%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSI-----VASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEFI+T LF++  V + +   + ++       G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   IFY + Q+LG+I     V  F  K   G L    +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP RS G A+
Sbjct:   54 YRAGIAEFIATFLFLYITVLTVMGVVRESSKCKT--VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 248          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 62/201 (30.85%), Postives = 99/201 (49.25%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL----AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKK----GSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGN 723
            ++A +AEF++T LF++  V + +  +K  +       G+  IA   G  +F  V   A +SGGH+NPAVTFGL L  ++++   ++Y + Q LG++  + ++K     L        +                  TF LVYTV+ +A D K+      +  +AP+ IGF V    LA  P +G  +NP RS G A+   N
Sbjct:   59 YRAGIAEFVATFLFLYVTVLTVMGVSKSPSKCGT--VGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVF-SATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDN 256          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 67/208 (32.21%), Postives = 95/208 (45.67%), Query Frame = 1
Query:  115 RFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIA----FNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            R D   S+   +  +AE + T   +FAG  S +     +N +T            IAI  G  L V V    +ISGGH NPAVT   A   +  ++    Y +AQLLGSI+AS  L+++  G                        TF L++ +   A D +  ++G  A IAIG  +  N++  GP +G SMNP RS GPA   G +
Sbjct:   27 RSDSLVSVPFLQKLVAEAVGTYFLIFAGCASLVVNENYYNMIT---------FPGIAIVWGLVLTVLVYTVGHISGGHFNPAVTIAFASTRRFPLIQVPAYVVAQLLGSILASGTLRLLFMGNHDQFSGTVPNGTNLQAFVFEFIMTFFLMFVICGVATDNR--AVGEFAGIAIGSTLLLNVIIGGPVTGASMNPARSLGPAFVHGEY 223          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP11_ORYSJ (Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 63/200 (31.50%), Postives = 94/200 (47.00%), Query Frame = 1
Query:  127 SFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            +FS+   +  +AE   T   +FAG G A+  N+        P     +AI  G A+ V V    +ISG H NPAVT   A   +        Y  AQ+LG+ +A+  L+++ GG                        TF L++ +   A D +  ++G +A +A+G  +  N+L AGP SG SMNP RS GPA+  G +
Sbjct:   41 AFSVPFIQKIIAEIFGTYFLIFAGCG-AVTINQSKNGQITFPG----VAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATCRRFPWRQVPAYAAAQMLGATLAAGTLRLMFGGRHEHFPGTLPAGSDVQSLVLEFIITFYLMFVISGVATDNR--AIGELAGLAVGATILLNVLIAGPISGASMNPARSLGPAMIGGEY 233          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18
Identity = 61/193 (31.61%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  148 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            K  ++E ++T L VF   G+A  + +  A  +      +  ++  G  + V +    +ISG H+NPAVT   A       +   FYW AQ  G++ A+F+LK V   +AV                     TF +++   A A D +  ++G +A +A+G  V    + AGP SGGSMNP R+  PAVAS  F
Sbjct:   55 KKVISEVVATFLLVFVTCGAASIYGEDNARISQ-----LGQSVAGGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLQPIAV-IGTTTPSGPHWHALAIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVF 239          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP21_ORYSJ (Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.873e-18
Identity = 66/202 (32.67%), Postives = 97/202 (48.02%), Query Frame = 1
Query:  124 DSFSLGSFKAYLAEFISTLLFVFAGVGSA-IAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            D F     K  ++E ++T L VF   G+A I+ + ++  + L  S      I  G  + V +    +ISG H+NPAVT   A+      +   FYW AQ  G+I ASF+LK V   + V                     TF +++   A A D +  ++G +A +A+G  V    + AG  SGGSMNP R+ GPA+AS  F
Sbjct:   41 DFFPPHLLKKVVSEVVATFLLVFMTCGAAGISGSDLSRISQLGQS------IAGGLIVTVMIYAVGHISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGAICASFVLKAVIHPVDV-IGTTTPVGPHWHSLVVEVIVTFNMMFVTLAVATDTR--AVGELAGLAVGSAVCITSIFAGAISGGSMNPARTLGPALASNKF 233          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 66/201 (32.84%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK--------VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEFI+T LF++  V + +   +     A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   ++Y + Q LG+I  + ++K         + GG     H                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP RS G A+
Sbjct:   51 WRAGIAEFIATFLFLYITVLTVMGVKRSPNMCA--SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHG----YTKGSGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 244          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 66/201 (32.84%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK--------VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEFI+T LF++  V + +   +     A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   ++Y + Q LG+I  + ++K         + GG     H                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP RS G A+
Sbjct:   51 WRAGIAEFIATFLFLYITVLTVMGVKRSPNMCA--SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHG----YTKGSGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 244          
The following BLAST results are available for this feature:
BLAST of FC875627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
PIP15_ARATH2.072e-1833.83Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH2.072e-1833.33Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP2_PEA3.534e-1834.34Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP16_MAIZE3.534e-1830.85Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
NO26_SOYBN3.534e-1832.21Nodulin-26 OS=Glycine max PE=1 SV=2[more]
NIP11_ORYSJ3.534e-1831.50Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica G... [more]
NIP23_MAIZE4.616e-1831.61Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
NIP21_ORYSJ7.873e-1832.67Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_ARATH1.028e-1732.84Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_VICFA1.028e-1732.84Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31401A08EF CTVClemen1 Citrus clementina cDNA clone C31401A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875627 ID=FC875627; Name=FC875627; organism=Citrus clementina; type=EST; length=743bp
GCTCGACCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACTCGA
GAGAGTTTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATGG
CTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAAG
GCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCGT
TGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGATC
CATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGTC
GCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCGT
CACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCT
TCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCTC
AAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTGG
AGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTT
TGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTG
GGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCT
GGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGNCCGTTCCTTCG
GGCCTGCCGTTGCCAGCGGCAACTTCCCAGACACTGGATCTAC
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