FC875627

Overview
NameFC875627
Unique NameFC875627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 66/201 (32.84%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK--------VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEFI+T LF++  V + +   +     A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   ++Y + Q LG+I  + ++K         + GG     H                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP RS G A+
Sbjct:   51 WRAGIAEFIATFLFLYITVLTVMGVKRSPNMCA--SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHG----YTKGSGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 244          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 61/199 (30.65%), Postives = 98/199 (49.25%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            ++A LAEF+ +LL+   G+G+++ +       A  P G++  A+  G A    V    ++SGGH+NPA+T    L  Q+++   + Y +AQLLG++  + +L  VT     G L +   +                  F  +  V+A+  D   G  G+ A + +GF +    L   PF+G  MNP RSF PAV + NF
Sbjct:   10 WRAILAEFLGSLLYTLLGLGASLRW-------APGPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAVRGTLGLSALHPSVGPGQGTVVELLLTAQF--ILCVFASFDDRHDGRPGS-AALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVITRNF 198          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17
Identity = 60/193 (31.09%), Postives = 92/193 (47.67%), Query Frame = 1
Query:  148 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            K  ++E ++T L VF   G+A  + +     +      +  ++  G  + V +    +ISG H+NPAVT   A       +   FYW AQ  G++ A+F+LK V   +AV                     TF +++   A A D +  ++G +A +A+G  V    + AGP SGGSMNP R+  PAVAS  F
Sbjct:   52 KKVISEVVATFLLVFVTCGAASIYGEDNRRISQ-----LGQSVAGGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLHPIAV-IGTTTPSGPHWHALLIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVF 236          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17
Identity = 61/185 (32.97%), Postives = 86/185 (46.49%), Query Frame = 1
Query:  157 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            +AE I T   +FAG GS +A NK+             I +  G  + V V     ISG H NPAVT   ++ G+        Y IAQL+GSI+AS  L ++                           +F L++ +   A D +  ++G +A IA+G  +  N+  AGP SG SMNP RS GPA+
Sbjct:   46 IAEAIGTYFVIFAGCGS-VAVNKIYGSVTFP-----GICVTWGLIVMVMVYTVGYISGAHFNPAVTITFSIFGRFPWKQVPLYIIAQLMGSILASGTLALLFDVTPQAYFGTVPVGSNGQSLAIEIIISFLLMFVISGVATDDR--AIGQVAGIAVGMTITLNVFVAGPISGASMNPARSIGPAI 222          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP22_ORYSJ (Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.992e-17
Identity = 63/201 (31.34%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  118 FDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNK-MTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVAS 717
            F D F     K  ++E ++T L VF   G+A  + + M   + L  S      +  G  + V +    +ISG H+NPAVT   A       +   FYW AQ  G++ A+F+L+ V   + V                     TF +++   A A D +  ++G +A +A+G  V    + AGP SGGSMNP R+  PAVAS
Sbjct:   42 FADIFPPNLLKKVISEVVATFLLVFVTCGAASIYGEDMKRISQLGQS------VVGGLIVTVMIYATGHISGAHMNPAVTLSFAFFRHFPWIQVPFYWAAQFTGAMCAAFVLRAVLYPIEV-LGTTTPTGPHWHALVIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVAS 233          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.137e-16
Identity = 62/200 (31.00%), Postives = 91/200 (45.50%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKV----VTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            ++  +AE I T   V  GVGS       T  +   PS +  IA   G  +        +ISG H+NPAVT G  + G+++I+  + Y   Q +G+I  + ++KV       GL +   +                 TF LV  V   + DP +  +   AP+A+G  + A  L A   +G SMNP RSFGPAV    + D
Sbjct:   23 WRQLMAELIGTFFLVVIGVGSC------TGGSEWSPS-IPQIAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKGVS-DPGRTDIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQNMWID 214          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 68/210 (32.38%), Postives = 98/210 (46.67%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----------TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            S+   +  + EF+ T   +FAG  SAI  N+        P  L  IA+  G  + V +    ++SG H NPAV+   A   +        Y  AQLLGS +A+ +L++V           G + V T+                  TF L++ + A A D  K + G+ A IAIG  +  +IL +GP SG SMNP RS GPA+  G + D
Sbjct:   38 SVSFVQKLIGEFVGTFTMIFAGC-SAIVVNETYGK----PVTLPGIALVWGLVVTVMIYSIGHVSGAHFNPAVSIAFASSKKFPFNQVPGYIAAQLLGSTLAAAVLRLVFHLDDDVCSLKGDVYVGTY---PSNSNTTSFVMEFIATFNLMFVISAVATD--KRATGSFAGIAIGATIVLDILFSGPISGASMNPARSLGPALIWGCYKD 237          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP12_ARATH (Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 64/202 (31.68%), Postives = 97/202 (48.02%), Query Frame = 1
Query:  127 SFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTG---GLAVPTHN----XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            S S+   +  +AE + T   +FAG  +A+A N     A   P     IAI  G  + V V    +ISG H NPAVT   A  G+  +     Y I+Q++GS +A+  L+++ G    +    H+                     TF L++ +   A D +  ++G +A +A+G  V  N++ AGP SG SMNP RS GPA+
Sbjct:   45 SISVPFLQKLMAEVLGTYFLIFAGC-AAVAVNTQHDKAVTLPG----IAIVWGLTVMVLVYSLGHISGAHFNPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCSGKHDVFVGTLPSGSNLQSFVIEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVIIAGPVSGASMNPGRSLGPAM 239          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP11_ARATH (Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 64/205 (31.22%), Postives = 96/205 (46.83%), Query Frame = 1
Query:  127 SFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTG---GLAVPTHN----XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASG 720
            S S+   +  +AEF+ T   VF G  S +    M  D  +   G   IAI  G  + V +    +ISG H+NPAVT   A  G+  +     Y I+Q++GS +A+  L+++ G    +    H+                     TF L++ +   A D +  ++G +A +AIG  V  N+L A P S  SMNP RS GPA+  G
Sbjct:   48 SVSVPFLQKLIAEFLGTYFLVFTGCASVVV--NMQNDNVVTLPG---IAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFTMEFIVTFYLMFIISGVATDNR--AIGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPALVYG 245          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP32_ORYSJ (Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 1
Query:  160 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK-----VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            AEF  T   +F  + + I   +           L+ IA   G A+ V V    +ISG H+NPAV+  + + G +     + Y  AQ+LGSI ASF +K     V  G + VP                    TF L++ + A A DP   ++  +  +A+G  +  N L AGP +G SMNP R+ GPA+A+G +
Sbjct:   99 AEFFGTFTLIFTVLSTIIMDEQHKG-----VESLLGIATSAGLAVTVLVLSLIHISGCHLNPAVSIAMTVFGHLPPAHLLPYIAAQILGSITASFAVKGMYHPVNPGIVTVP------KVGTVEAFFLEFVTTFVLLFIITALATDP--NAVKELIAVAVGATIMMNALVAGPSTGASMNPARTLGPAIATGRY 279          
The following BLAST results are available for this feature:
BLAST of FC875627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
PIP11_ARATH1.028e-1732.84Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
MIP_CHICK1.028e-1730.65Lens fiber major intrinsic protein OS=Gallus gallu... [more]
NIP22_MAIZE1.754e-1731.09Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]
NIP1_NICAL2.291e-1732.97Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]
NIP22_ORYSJ2.992e-1731.34Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica G... [more]
AQP_HAEIX1.137e-1631.00Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
NIP31_ARATH2.533e-1632.38Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
NIP12_ARATH7.369e-1631.68Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2... [more]
NIP11_ARATH9.625e-1631.22Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1... [more]
NIP32_ORYSJ1.257e-1531.96Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC31401A08EF CTVClemen1 Citrus clementina cDNA clone C31401A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875627 ID=FC875627; Name=FC875627; organism=Citrus clementina; type=EST; length=743bp
GCTCGACCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACTCGA
GAGAGTTTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATGG
CTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAAG
GCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCGT
TGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGATC
CATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGTC
GCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCGT
CACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCT
TCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCTC
AAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTGG
AGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTT
TGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTG
GGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCT
GGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGNCCGTTCCTTCG
GGCCTGCCGTTGCCAGCGGCAACTTCCCAGACACTGGATCTAC
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