FC875627

Overview
NameFC875627
Unique NameFC875627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875627_ssr22 microsatellite FC875627_ssr22:22..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:2..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.092e-25
Identity = 74/199 (37.19%), Postives = 107/199 (53.77%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            +KA  AEF++ L+FV   VGS I +        +D   +V I++C G ++   V    +ISGGH+NPAVT  +    +I+I   +FY  AQ LG+I+ + +L +VT     GGL V T                   TF LV+T++A+    +    G++A +AIGF V    L A  ++G SMNP RSFGPAV  GN+
Sbjct:   35 WKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVD---MVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNW 227          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.685e-25
Identity = 74/199 (37.19%), Postives = 107/199 (53.77%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            +KA  AEF++ L+FV   +GS I +        +D   +V I++C G ++   V    +ISGGH+NPAVT  +    +I+I   +FY  AQ LG+I+ + +L +VT     GGL V T                   TF LV+T++A+    +    G+IA +AIGF V    L A  ++G SMNP RSFGPAV  GN+
Sbjct:   35 WKAVTAEFLAMLIFVLLSLGSTINWGGKENPLPVD---MVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNW 227          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.134e-24
Identity = 76/201 (37.81%), Postives = 104/201 (51.74%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSI----VASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGN 723
            ++A +AEFI+TLLF++  V + I   K T     D  GL+ IA   G  +FV V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I         +K     L    +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RSFG AV   N
Sbjct:   37 YRALIAEFIATLLFLYVTVATVIGHKKQTGPC--DGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNN 234          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.134e-24
Identity = 82/220 (37.27%), Postives = 114/220 (51.82%), Query Frame = 1
Query:  124 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGN 723
            D+  LGS   ++A +AEFI+TLLF++  V + I +   T      ADAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  I Y +AQ LG+I    L+K          GG A   +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RS G AV   N
Sbjct:   31 DAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYGGGA---NTLAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNN 246          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.935e-24
Identity = 74/204 (36.27%), Postives = 109/204 (53.43%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAF-----NKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            ++A +AEF++  LF+F  +GSA+ F     N  T+ AA D    V +++  G ++        +ISG H+NPAVT GL L  QI++L  + Y IAQ +G+IVA+ +L  +T  L   ++  ++                 T  LV  V AT  D ++  LG  AP+AIGF V    L A  ++G  +NP RSFG AV + NF D
Sbjct:   11 WRAVVAEFLAMTLFIFISIGSALGFQYPVRNNQTSGAAQDN---VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSSLPGNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHNFQD 210          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.527e-24
Identity = 76/199 (38.19%), Postives = 108/199 (54.27%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            +KA  AEF++ L+FV   +GS I  N   A+  L P  +V I++C G ++   V    +ISGGH+NPAVT  +    +I+I   +FY  AQ LG+I+ + +L +VT     GGL V T                   TF LV+T++A+    +    G+IA +AIG  V    L A  ++G SMNP RSFGPAV  GN+
Sbjct:   35 WKAVTAEFLAMLIFVLLSLGSTI--NWGGAEKPL-PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTT--VHGNLSAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGNW 227          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.300e-24
Identity = 80/218 (36.70%), Postives = 114/218 (52.29%), Query Frame = 1
Query:  124 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMT--------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            D+  LGS   ++A +AEFI+TLLF++  V + I +   T        ADAA    G++ IA   G  +FV V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG++    L+K          GG A   ++                 TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RS G AV
Sbjct:   31 DAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQSAYFDRYGGGA---NSLASGYSRGAGLGAEIVGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAV 244          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.300e-24
Identity = 81/216 (37.50%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  124 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            D+  LGS   ++A +AEFI+TLLF++  V + I +   T      ADAA    G++ IA   G  +FV V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG+I    L+K          GG A   ++                 TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RS G AV
Sbjct:   31 DAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGA---NSLASGYSRGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAV 242          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.300e-24
Identity = 73/199 (36.68%), Postives = 106/199 (53.27%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            +KA  AEF++ L+FV   +GS I +        +D   +V I++C G ++   V    +ISGGH+NPAVT  +    +I+I   +FY  AQ LG+I+ + +L +VT     GGL V                     TF LV+T++A+    +    G+IA +AIGF V    L A  ++G SMNP RSFGPAV  GN+
Sbjct:   35 WKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVD---MVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTM--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNW 227          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.310e-24
Identity = 75/212 (35.38%), Postives = 110/212 (51.89%), Query Frame = 1
Query:  124 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS-----GLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            D+  LG    ++A +AEFI+TLLF++  + + I +   T D AL+P      G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  ++T++  + Y +AQ LG+I    L+K              +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RS G A+
Sbjct:   27 DATELGKWSFYRALIAEFIATLLFLYVTIMTVIGYKSQT-DPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAI 236          
The following BLAST results are available for this feature:
BLAST of FC875627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
AQP4_RAT5.092e-2537.19Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_DIPME8.685e-2537.19Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
PIP27_ARATH1.134e-2437.81Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP21_ORYSJ1.134e-2437.27Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
AQP1_PIG1.935e-2436.27Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP4_BOVIN2.527e-2438.19Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
PIP22_MAIZE3.300e-2436.70Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_MAIZE3.300e-2437.50Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
AQP4_HUMAN3.300e-2436.68Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
PIP25_ARATH4.310e-2435.38Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC31401A08EF CTVClemen1 Citrus clementina cDNA clone C31401A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875627 ID=FC875627; Name=FC875627; organism=Citrus clementina; type=EST; length=743bp
GCTCGACCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACTCGA
GAGAGTTTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATGG
CTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAAG
GCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCGT
TGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGATC
CATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGTC
GCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCGT
CACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCT
TCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCTC
AAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTGG
AGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTT
TGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTG
GGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCT
GGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGNCCGTTCCTTCG
GGCCTGCCGTTGCCAGCGGCAACTTCCCAGACACTGGATCTAC
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