FC875627

Overview
NameFC875627
Unique NameFC875627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875627_ssr22 microsatellite FC875627_ssr22:22..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:2..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.629e-24
Identity = 76/197 (38.58%), Postives = 105/197 (53.30%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG----LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEFI+TLLF++  V + I + K T   A    GL+ IA   G  +FV V   A ISGGH+NPAVTFGL L  ++++L  + Y IAQ  G+I    L+K    G         ++                 TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RSFG AV
Sbjct:   39 WRAAIAEFIATLLFLYITVATVIGYKKETDPCA--SVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 232          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.352e-24
Identity = 76/210 (36.19%), Postives = 110/210 (52.38%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT--------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGN 723
            ++A +AEFI+TLLF++  V + I +      K+  +   D  G++ IA   G  +F+ V   A ISGGH+NPAVTFGL LG +++++  + Y IAQ  G+I  + L K           GG+    +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RSFGPAV   N
Sbjct:   39 YRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGV----NTVSDGYNKGTALGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNN 243          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.602e-24
Identity = 73/207 (35.27%), Postives = 105/207 (50.72%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGN 723
            ++A +AEF++TLLF++  V + I +   T       DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y  AQ LG+I    L+K    G         +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RS G AV   N
Sbjct:   40 YRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVVYNN 245          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 9.602e-24
Identity = 74/204 (36.27%), Postives = 107/204 (52.45%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            ++A +AEF++ +LFVF  +GSA+ FN       TA AA D    V +++  G ++        +ISG H+NPAVT GL L  QI+IL  + Y IAQ +G+IVA+ +L  +T  L   ++  +                  T  LV  V AT  D ++  LG   P+AIG  V    L A  ++G  +NP RSFG +V + NF D
Sbjct:   11 WRAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDN---VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDNSLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSGPLAIGLSVALGHLLAIDYTGCGINPARSFGSSVITHNFKD 210          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 72/207 (34.78%), Postives = 106/207 (51.21%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS------GLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGN 723
            ++A +AEF++TLLF++  V + I +   T  AA  P       G++ IA   G  +F+ V   A +SGGH+NPAVTFGL L  +++++  + Y +AQ LG+I    L+K       V      +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RS G AV   N
Sbjct:   36 YRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELSAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNN 241          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 74/203 (36.45%), Postives = 105/203 (51.72%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS------GLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEFI+TLLF++  V + I +   T  AA  P       G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I    L+K       V      +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RS G AV
Sbjct:   41 YRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAV 242          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 73/203 (35.96%), Postives = 104/203 (51.23%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKM------TADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEFI+TLLF++  V + I +         T DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I    L+K              +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RS G AV
Sbjct:   40 YRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVKGFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAV 241          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 74/203 (36.45%), Postives = 105/203 (51.72%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEFI+TLLF++  V + I +   T       DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I    L+K       V      +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RS G AV
Sbjct:   40 YRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAV 241          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 71/203 (34.98%), Postives = 106/203 (52.22%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEF++TLLF++  V + I +   +      ADAA    G++ IA   G  +F+ V   A +SGGH+NPAVTFGL L  +++++  + Y +AQ LG+I    L+K       V      +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RS G AV
Sbjct:   41 YRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAFYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAV 242          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.649e-23
Identity = 76/208 (36.54%), Postives = 107/208 (51.44%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMT----ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGN 723
            ++A +AEFI+TLLF++  V + I F   T       A    GL+ I+   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG+     L+KV         GG A   +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RSFG AV   N
Sbjct:   37 YRAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGGGA---NMLSDGYNVGVGVGAEIIGTFVLVYTVF-SATDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNN 240          
The following BLAST results are available for this feature:
BLAST of FC875627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
PIP1_ATRCA5.629e-2438.58Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP27_MAIZE7.352e-2436.19Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP26_MAIZE9.602e-2435.27Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
AQP1_CANFA9.602e-2436.27Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
PIP25_MAIZE2.139e-2334.78Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP23_MAIZE2.139e-2336.45Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP22_ORYSJ2.139e-2335.96Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP24_MAIZE2.794e-2336.45Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_ORYSJ2.794e-2334.98Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP26_ARATH3.649e-2336.54Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC31401A08EF CTVClemen1 Citrus clementina cDNA clone C31401A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875627 ID=FC875627; Name=FC875627; organism=Citrus clementina; type=EST; length=743bp
GCTCGACCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACTCGA
GAGAGTTTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATGG
CTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAAG
GCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCGT
TGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGATC
CATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGTC
GCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCGT
CACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCT
TCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCTC
AAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTGG
AGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTT
TGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTG
GGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCT
GGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGNCCGTTCCTTCG
GGCCTGCCGTTGCCAGCGGCAACTTCCCAGACACTGGATCTAC
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