FC875627

Overview
NameFC875627
Unique NameFC875627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875627_ssr22 microsatellite FC875627_ssr22:22..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:2..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.174e-21
Identity = 73/206 (35.44%), Postives = 104/206 (50.49%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGL---VAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            SL  FKA  AEF++TL+FVF G+GSA+ +          PS L   + I+I  G A+         +SGGH+NPA+T  L +G QI++L  +FY  AQL+G+I  + +L  +      G LAV   N                 TF L   ++++    +   +G+ A ++IG  V    L    F+G SMNP RSFGPAV    F
Sbjct:    7 SLAFFKAVFAEFLATLIFVFFGLGSALKW----------PSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGILYWLAPLNARGNLAVNALN--NNTTPGKAMVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRF 199          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.533e-21
Identity = 68/203 (33.50%), Postives = 104/203 (51.23%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            S   ++A  AEF +TL +VF G+GS++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G +G++A +A+GF +    L    ++G  MNP RSF PA+ + NF
Sbjct:    4 SASFWRAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNF 196          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.002e-21
Identity = 69/203 (33.99%), Postives = 105/203 (51.72%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            S   ++A  AEF +TL +VF G+G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T         X         T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNP RSF PA+ + NF
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNF 198          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.002e-21
Identity = 67/203 (33.00%), Postives = 103/203 (50.74%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            S   ++A  AEF +TL +VF G+G+++ +          P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNP RSF PA+ + NF
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRWTP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNF 198          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.615e-21
Identity = 69/205 (33.66%), Postives = 102/205 (49.76%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAA----LDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGN 723
            ++A +AEF++TLLF++  + + I +   T   A        G++ IA   G  +FV V   A ISGGH+NPAVT GL L  +++++  + Y +AQ LG+I     +K              +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RSFG AV   N
Sbjct:   38 YRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNN 241          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.615e-21
Identity = 71/204 (34.80%), Postives = 106/204 (51.96%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAA----LDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEF++TLLF++  V + I +   +   A        G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG+I     +K          GG A   ++                 TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RSFG AV
Sbjct:   36 YRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGA---NSLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 235          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.615e-21
Identity = 67/201 (33.33%), Postives = 98/201 (48.76%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            ++  +AEF+ T   V  G+GS + +    A        +  IA   G  +        ++SG H+NPAVT GL +   I+IL G FY ++Q +G+I  + L+K  T     GGL V                     TF LV+ V+    D ++  +   AP+AIG  + A  L+A  ++G SMNP RSFGPAV  GN+ D
Sbjct:   23 WRMLVAEFLGTFFLVSIGIGSTMGWGGDYAPT------MTQIAFTFGLVVATLAQAFGHVSGCHINPAVTIGLMITADISILKGAFYIVSQCVGAIAGAALIKAATPSDVIGGLGVT--GIDPRLTAGQGVMIEALITFILVFVVHG-VCDNRRSDIKGSAPLAIGLSITAGHLSAIKYTGASMNPARSFGPAVVMGNWTD 214          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.415e-21
Identity = 69/201 (34.33%), Postives = 103/201 (51.24%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAA----LDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEF++TLLF++  V + I +   +   A        G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG+I     +K       V      +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RSFG AV
Sbjct:   36 YRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGGGANFLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 235          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP31_ORYSJ (Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.415e-21
Identity = 71/194 (36.60%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  160 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-----TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            AEF+ T + +F    + I   K     A+ P G  A   C G A+   +    +ISG H+NP++T   A       L    Y   Q+LGSI A F LK V     +GG+ VP                    TF L++ V A A D +  ++G +A IA+G  V  NIL AGP +GGSMNP R+ GPAVA+GN+
Sbjct:   87 AEFVGTFILIFFATAAPIVNQKY--GGAISPFGNAA---CAGLAVTTIILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQVLGSICAGFALKGVFHPFLSGGVTVPDPTISTAQAFFTEFII----TFNLLFVVTAVATDTR--AVGELAGIAVGAAVTLNILIAGPTTGGSMNPVRTLGPAVAAGNY 269          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.415e-21
Identity = 67/203 (33.00%), Postives = 104/203 (51.23%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            S   ++A  AEF +TL +VF G+G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G +G++A +A+GF +    L    ++G  MNP RSF PA+ + NF
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNF 198          
The following BLAST results are available for this feature:
BLAST of FC875627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
AQP5_RAT1.174e-2135.44Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
MIP_RAT1.533e-2133.50Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_CAVPO2.002e-2133.99Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_CANFA2.002e-2133.00Lens fiber major intrinsic protein OS=Canis famili... [more]
PIP24_ARATH2.615e-2133.66Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP22_ARATH2.615e-2134.80Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
AQP_AEDAE2.615e-2133.33Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]
PIP23_ARATH3.415e-2134.33Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
NIP31_ORYSJ3.415e-2136.60Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica G... [more]
MIP_MOUSE3.415e-2133.00Lens fiber major intrinsic protein OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC31401A08EF CTVClemen1 Citrus clementina cDNA clone C31401A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875627 ID=FC875627; Name=FC875627; organism=Citrus clementina; type=EST; length=743bp
GCTCGACCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACTCGA
GAGAGTTTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATGG
CTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAAG
GCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCGT
TGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGATC
CATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGTC
GCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCGT
CACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCT
TCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCTC
AAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTGG
AGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTT
TGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTG
GGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCT
GGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGNCCGTTCCTTCG
GGCCTGCCGTTGCCAGCGGCAACTTCCCAGACACTGGATCTAC
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