FC875627

Overview
NameFC875627
Unique NameFC875627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875627_ssr22 microsatellite FC875627_ssr22:22..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:2..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 3.415e-21
Identity = 66/201 (32.84%), Postives = 97/201 (48.26%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            ++  +AEF+ T   V  G+GS   +   +         L  IA   G  +        ++SG H+NPAVT GL +   ++IL G FY ++Q +G+I  + ++K  T     GGL V                     TF LV+ V+    D ++  +   AP+AIG  + A  LAA  ++G SMNP RSFGPAV  GN+ D
Sbjct:   23 WRMLVAEFLGTFFLVAIGIGSTTGWTDYSPT-------LTQIAFTFGLVVATLAQAFGHVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPSEVVGGLGVT--GIAPGLSTGQGVLIEALITFMLVFVVHG-VCDNRRTDVKGSAPLAIGLSITAGHLAAIKYTGASMNPARSFGPAVVMGNYTD 213          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.415e-21
Identity = 70/204 (34.31%), Postives = 103/204 (50.49%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGL---VAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA---VPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            S+  FKA  AEF++TL+FVF G+GSA+ +          PS L   + I+I  G A+         +SGGH+NPA+T  L +G QI++L  IFY  AQL+G+I  + +L  +  G A   +  +                  TF L   ++++    +   +G+ A ++IG  V    L    F+G SMNP RSFGPAV    F
Sbjct:    7 SVAFFKAVFAEFLATLIFVFFGLGSALKW----------PSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPGNARGNLAVNALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRF 199          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21
Identity = 73/206 (35.44%), Postives = 102/206 (49.51%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGL---VAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            S+   KA  AEF++TL+FVF G+GSA+ +          PS L   + IA+  G A+         +SGGH+NPA+T  L +G QI++L   FY  AQL+G+I  + +L  V      G LAV   N                 TF L   ++A+    +   +G+ A ++IG  V    L    F+G SMNP RSFGPAV    F
Sbjct:    7 SVAFLKAVFAEFLATLIFVFFGLGSALKW----------PSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALN--NNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRF 199          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.608e-21
Identity = 68/204 (33.33%), Postives = 103/204 (50.49%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGL---VAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA---VPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            SL   KA  AEF++TL+FVF G+ SA+ +          PS L   + IA+  G A+         +SGGH+NPA+T  L +G QI++L  +FY +AQL+G+I  + +L  +  G A   +  ++                 TF L   ++++    +   +G+ A ++IG  V    L    F+G SMNP RSFGPAV    F
Sbjct:    7 SLAFLKAVFAEFLATLIFVFFGLASALKW----------PSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRF 199          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.937e-21
Identity = 66/208 (31.73%), Postives = 105/208 (50.48%), Query Frame = 1
Query:  124 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMTADA-ALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            D+  LG    ++A +AEF++TL+F++  + + I +    A   A    G + +A   G  +FV V     +SGGH+NPAVT GL  G +++++  + Y +AQ LG+I  + ++K +       L    +                  TF LVYTV+ +A DPK+ +    +  + P+ IGF V    LA  P +G  +NP RS G AV
Sbjct:   33 DTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVF-SATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAV 239          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.298e-20
Identity = 69/194 (35.57%), Postives = 98/194 (50.52%), Query Frame = 1
Query:  160 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-----TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            AEF+ TL+ +FAG  +AI   K   D A     L+  A   G A+ + +    +ISG H+NPAVT   A            Y  AQ++ S+ A+F LK V     +GG+ VPT                   +F L++ V A A D +  ++G +A IA+G  V  NIL AGP +  SMNP R+ GPA+A+ N+
Sbjct:   84 AEFVGTLILIFAGTATAIVNQK--TDGA---ETLIGCAASAGLAVMIVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQVMASVSAAFALKAVFEPTMSGGVTVPT------VGLSQAFALEFIISFNLMFVVTAVATDTR--AVGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNY 264          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.298e-20
Identity = 61/190 (32.11%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  157 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            LAEF++T   +FAG+G+     K  A           +A+  G A+   V    ++SG H+NPAVT G A+ G+        Y +AQ   +  AS +L+++ GG   P                    TF L++ + A A D +  ++G +A +A+G  +  N+L AGP SG SMNP RS GPA+    +
Sbjct:   60 LAEFLATFFLMFAGLGAITVEEKKGAVT------FPGVAVAWGAAVMAMVYAVGHVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQTAAATAASVVLRLMFGGRHAPVPATLPGGAHAQSLVIEFVITFYLMFVIMAVATDDQ--AVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSKY 241          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.695e-20
Identity = 70/201 (34.83%), Postives = 103/201 (51.24%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFN-KMTADAA---LDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++A +AEF++TLLF++  V + I +  +   DA        G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  ++++   + Y IAQ LG+I     +K              ++                 TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NP RSFG AV
Sbjct:   38 YRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 237          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.695e-20
Identity = 70/194 (36.08%), Postives = 97/194 (50.00%), Query Frame = 1
Query:  160 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-----TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            AEF+ T + +F      I   K   D A     L+  A C G A+ + +    +ISG H+NP++T   A            Y  AQ+  SI ASF LK V     +GG+ +P+ +                 TF L++ V A A D +  ++G +A IA+G  V  NIL AGP +GGSMNP R+ GPAVASGN+
Sbjct:   82 AEFVGTFILIFTATAGPIVNQKY--DGA---ETLIGNAACAGLAVMIIILSTGHISGAHLNPSLTIAFAALRHFPWAHVPAYIAAQVSASICASFALKGVFHPFMSGGVTIPSVSLGQAFALEFII------TFILLFVVTAVATDTR--AVGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVASGNY 262          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.214e-20
Identity = 68/199 (34.17%), Postives = 94/199 (47.24%), Query Frame = 1
Query:  130 FSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            FS+   +  +AE + T   +FAG  +A+A NK T      P     I I  G A+ V V    +ISG H+NPAVT   A  G+        Y  AQ+ GS  AS  L+ + GG                        TF L++ V   A D +  ++G +A +A+G  V  N+L AGP SG SMNP R+ GPA+  G +
Sbjct:   48 FSVQFAQKVIAEILGTFFLIFAGC-AAVAVNKRTGGTVTFPG----ICITWGLAVMVMVYSVGHISGAHLNPAVTLAFATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFFGTAPAGSDVQSLAMEFIITFYLMFVVSGVATDNR--AIGELAGLAVGATVLVNVLFAGPISGASMNPARTIGPAIILGRY 239          
The following BLAST results are available for this feature:
BLAST of FC875627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
AQP_ANOGA3.415e-2132.84Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
AQP5_MOUSE3.415e-2134.31Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
AQP5_HUMAN5.826e-2135.44Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
AQP5_PIG7.608e-2133.33Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
PIP27_ORYSJ9.937e-2131.73Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
NIP61_ARATH1.298e-2035.57Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]
NIP14_ORYSJ1.298e-2032.11Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
PIP21_ARATH1.695e-2034.83Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
NIP51_ARATH1.695e-2036.08Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
NIP13_ORYSJ2.214e-2034.17Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC31401A08EF CTVClemen1 Citrus clementina cDNA clone C31401A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875627 ID=FC875627; Name=FC875627; organism=Citrus clementina; type=EST; length=743bp
GCTCGACCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACTCGA
GAGAGTTTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATGG
CTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAAG
GCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCGT
TGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGATC
CATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGTC
GCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCGT
CACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCT
TCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCTC
AAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTGG
AGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTT
TGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTG
GGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCT
GGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGNCCGTTCCTTCG
GGCCTGCCGTTGCCAGCGGCAACTTCCCAGACACTGGATCTAC
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