FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_NEMVE (Spastin OS=Nematostella vectensis GN=v1g144095 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.717e-20
Identity = 52/127 (40.94%), Postives = 83/127 (65.35%), Query Frame = 2
Query:   92 YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-EELASDVDLEGNCNMADGYSGS 469
            +VK++  LAS +  S+  +DEVDS+L  R   GEHE  R++K EF+V++DG+    +ER+LV+ ATNRP +LD+A +RR+ +R+ + LPD   R+ ++  +LAK     S  +++    M + YSGS
Sbjct:  404 FVKSLEDLASILTTSLFTIDEVDSLLTERRE-GEHEHSRRLKTEFLVSFDGVVADPEERILVMGATNRPQELDDAALRRMVKRIHIPLPDKETRKVLLTKLLAKHHNPLSGAEIDRLARMTEHYSGS 529          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.717e-20
Identity = 60/164 (36.59%), Postives = 93/164 (56.71%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK 478
            AKAVA E  A FI I  S    K+ GEG + V+ VF LA + +PS++F+DE+D++  +R      G+ E  R +  + +   DG  ++    V ++AATNRP  LD A++R  R  R + V LP+   R +I+++  +   LA +VD+E    + DG SG+  K
Sbjct:  202 AKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLM-QLLAELDGFESRG--NVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLK 362          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.717e-20
Identity = 63/167 (37.72%), Postives = 95/167 (56.89%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSKTCV 487
            AKAVA E  A FI +  S + +K+ GEG + V+ +F LA + APS++F+DE+D++  +R +    G+ E  R M  + +   DG    D   V V+AATNR   +D AV+R  R  R + V LP    R +I+ +   K ++A DVDLE    + +G+SG+  K  V
Sbjct:  190 AKAVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILFIDEIDAIASKRVDIGTSGDREVQRTML-QLLAELDGFDPLD--NVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVV 353          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.717e-20
Identity = 60/158 (37.97%), Postives = 89/158 (56.33%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            A+AVA E GA F  I+   I SK  GE E  ++  F  A K APS++F+DE+DS+  +RE     E  R++ ++ +   DGL  K +  V+V+ ATNRP  +D A+ R  R  R + + +PD   R +++R+     +LA DVDLE       GY G+
Sbjct:  258 ARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT-NGEVERRIVSQLLTLMDGL--KSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGA 412          

HSP 2 Score: 98.5969 bits (244), Expect = 1.717e-20
Identity = 56/161 (34.78%), Postives = 89/161 (55.28%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHE---AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A E  ANFI++    + + WFGE E  V+ +F  A + AP V+F DE+DS+  +R      +   A  ++ N+ +   DG+    K+ V ++ ATNRP  +D A++R  RL + + + LPD  +R  I +  L K  +A DVD+        G+SG+
Sbjct:  531 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNA--KKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGA 689          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 59/161 (36.65%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EA   F  IS S     + G G   V+ +F  A K AP ++F+DE+D+ +GR+      G H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA+D+D         G+SG+
Sbjct:  202 AKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA-VGRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGA 359          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 59/161 (36.65%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EA   F  IS S     + G G   V+ +F  A K AP ++F+DE+D+ +GR+      G H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA+D+D         G+SG+
Sbjct:  202 AKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA-VGRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGA 359          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 59/158 (37.34%), Postives = 89/158 (56.33%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            A+AVA E GA F  I+   I SK  GE E  ++  F  A K APS++F+DE+DS+  +RE     E  R++ ++ +   DGL  K +  V+V+ ATNRP  +D A+ R  R  R + + +PD   R +++R+     +L+ DVDLE       GY G+
Sbjct:  259 ARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGL--KSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 413          

HSP 2 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 56/160 (35.00%), Postives = 90/160 (56.25%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A E  ANFI++    + + WFGE E  V+ +F  A + AP V+F DE+DS+  +R +       A  ++ N+ +   DG+    K+ V ++ ATNRP  +D A++R  RL + + + LPD  +R +I +  L K  +A +VDL        G+SG+
Sbjct:  532 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPIAKNVDLRALARHTQGFSGA 689          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 60/159 (37.74%), Postives = 91/159 (57.23%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNC-NMADGYSGS 469
            AKA A EAGANF++I  + + +K+ GE E  ++ +F  A   AP V+F DEVD++   R   G    + ++ N+F+V  DG    ++  V V+ ATNRP  +D A +R  R    L V LP+A  R  I++ I  K+ +   VDL+G   N  +G+SG+
Sbjct:  579 AKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSRGKEGAW-VVERLLNQFLVELDG---GERRNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSGA 733          

HSP 2 Score: 82.8037 bits (203), Expect = 9.752e-16
Identity = 53/166 (31.93%), Postives = 85/166 (51.20%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER--------VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            A A+A EAG  F  IS + + S   G  E+ ++ +FS A + APS+VF+DE+D++  +REN  + E  +++  + +   DG   K  +         VLV+ ATNRP  LD A+ R  R    + +  PD   R +I+ V+  K  L    D +    +  G+ G+
Sbjct:  284 ANAIANEAGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQ-QREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARLTPGFVGA 448          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.826e-20
Identity = 57/158 (36.08%), Postives = 92/158 (58.23%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            A+AVA E GA F  I+   I SK  GE E  ++  F+   K +P+++F+DE+D++  +RE     E  +++ ++ +   DGL+T  +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+R+     +L  DVDLE   N   G+ G+
Sbjct:  260 ARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFIDEIDAIAPKREK-AHGEVEKRIVSQLLTLMDGLKT--RAHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVGA 414          

HSP 2 Score: 94.7449 bits (234), Expect = 2.480e-19
Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A E  ANFI+I    + + WFGE E  V+ VF  A   AP V+F DE+DS+   R         A  ++ N+ +   DG+    K+ V ++ ATNRP  +D AV+R  RL + + + LPD  +R +I +  L K  L++D+DL        G+SG+
Sbjct:  533 AKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNA--KKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGA 690          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.826e-20
Identity = 61/164 (37.20%), Postives = 95/164 (57.93%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK 478
            AKAVATE+ A FI +  S    K+ GEG + V+ VF LA + APS+VF+DE+D++  +R +    GE E  R +  + +   DG +  D   V ++AATNR   LD A++R  R  R + V LP+   R++I R+ L K +   ++  +   +M +G+SG+  K
Sbjct:  185 AKAVATESNATFIQVVASEFAQKFVGEGARIVREVFELARRKAPSIVFIDEIDAIGAKRVDMGTSGEREIQRTLM-QLLAEIDGFKPLD--NVKIIAATNRLDILDPALLRPGRFDRLIEVPLPNFEGRKEIFRIYLQKMKTDGNIRYDILASMTEGFSGAEIK 345          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
SPAST_NEMVE1.717e-2040.94Spastin OS=Nematostella vectensis GN=v1g144095 PE=... [more]
PSMR_METTH1.717e-2036.59Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_AERPE1.717e-2037.72Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
CD48A_ARATH1.717e-2037.97Cell division control protein 48 homolog A OS=Arab... [more]
FTSH_SALTY2.243e-2036.65Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI2.243e-2036.65Cell division protease ftsH OS=Salmonella typhi GN... [more]
CDC48_SOYBN2.243e-2037.34Cell division cycle protein 48 homolog OS=Glycine ... [more]
CD48C_ARATH2.243e-2037.74Cell division control protein 48 homolog C OS=Arab... [more]
TERA2_CAEEL3.826e-2036.08Transitional endoplasmic reticulum ATPase homolog ... [more]
PSMR_SULTO3.826e-2037.20Proteasome-activating nucleotidase OS=Sulfolobus t... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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