FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 97.4413 bits (241), Expect = 3.826e-20
Identity = 57/166 (34.34%), Postives = 94/166 (56.63%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSKTC 484
            AKAVA   GANFI    S I  K+ GE  + ++ +F+ A +  P ++F+DEVD++ GRR + G   + E  R +  E +   DG     + ++++  ATNRP  LD A++R  RL R++ + LP+   R +I ++  AK +   + D E    M+DG++G+  + C
Sbjct:  232 AKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLM-ELLTQMDGFDNLGQTKIIM--ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNC 394          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.826e-20
Identity = 59/161 (36.65%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EA   F  IS S     + G G   V+ +F  A K AP ++F+DE+D+ +GR+      G H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA D+D         G+SG+
Sbjct:  202 AKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA-VGRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGA 359          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.826e-20
Identity = 59/161 (36.65%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EA   F  IS S     + G G   V+ +F  A K AP ++F+DE+D+ +GR+      G H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA D+D         G+SG+
Sbjct:  202 AKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA-VGRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGA 359          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.826e-20
Identity = 59/161 (36.65%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EA   F  IS S     + G G   V+ +F  A K AP ++F+DE+D+ +GR+      G H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA D+D         G+SG+
Sbjct:  202 AKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA-VGRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGA 359          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.826e-20
Identity = 59/162 (36.42%), Postives = 91/162 (56.17%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP----GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EA   FI++S S     + G G   V+ +F  A K AP ++F+DE+D+ +GR        G H+   +  N+ +V  DG  T D   ++V+AATNRP  LD A++R  R  R++ +  PD   R +I++V    ++LA DVDLE       G++G+
Sbjct:  205 AKAIAGEAHVPFISVSGSDFVEMFVGVGAARVRDLFETAKKHAPCIIFIDEIDA-VGRARGAIPVGGGHDEREQTLNQLLVEMDGFDTSD--GIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGA 363          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.826e-20
Identity = 61/161 (37.89%), Postives = 89/161 (55.28%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            A+A+A EA   F  IS S     + G G   V+ +F  A K AP ++F+DE+D+ +GR+      G H+   +  N+ +V  DG    D   V+V+AATNRP  LD A+ R  R  R+++V LPD   RE+I++V + K  +A DVD         GYSG+
Sbjct:  201 ARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDEIDA-VGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGND--GVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGA 358          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FIGN_MOUSE (Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.826e-20
Identity = 49/155 (31.61%), Postives = 93/155 (60.00%), Query Frame = 2
Query:    5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGNCNMADGYSG 466
            + +A++ GA F  I+ S + +KW GE EK + A F +A    PSV+FV ++D +L  + +  EH  + +M+ EF++  D + T  +++++V+ AT++P ++DE++ R   +RL++ LPD+  R +II  +L +     +D +        +G+SG
Sbjct:  537 RCIASQLGATFFKIAGSGLVAKWIGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVSE-EHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIPLPDSTARHQIIVQLLTQHNYCLNDKEFALLVQRTEGFSG 690          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: AFG2_SCHPO (ATPase family gene 2 protein OS=Schizosaccharomyces pombe GN=afg2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.826e-20
Identity = 60/158 (37.97%), Postives = 90/158 (56.96%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+ATE G NFI +    +  K+ GE E+ V+ VF  A + +PSV+F DE+D++   R   GE  +  ++    +   DG+       VLVLAATNRP  +D A++R  RL R L V  P+   R++I+++   K + A DVDL+      +G SG+
Sbjct:  599 AKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANR---GEDNSSDRVVAALLNELDGIEA--LRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGA 751          

HSP 2 Score: 77.0258 bits (188), Expect = 5.351e-14
Identity = 51/158 (32.28%), Postives = 82/158 (51.90%), Query Frame = 2
Query:    5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA-KEELASDVDLEGNCNMADGYSGS 469
            +AVA EA A    I   S+  K+ GE E  ++ +F  A    PS++F+DE+D++  +R      EA  +     +   DG+    K  V+V+AATNRP  +DEA+ R  RL + + + +PD   R  II+++L+      +D  LE   +    Y G+
Sbjct:  331 RAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKR-TEDVSEAESRAVATLLTLLDGMANAGK--VVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGA 485          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 59/161 (36.65%), Postives = 89/161 (55.28%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHE---AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A E  ANFI+I    + + WFGE E  V+ VF  A   AP V+F DE+DS+   R      +   A  ++ N+ +   DG+    K+ V ++ ATNRP  +D AV+R  RL + + + LPD  +R +I++  L K  L+ D+DL        G+SG+
Sbjct:  534 AKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGMNA--KKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSGA 692          

HSP 2 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 55/158 (34.81%), Postives = 90/158 (56.96%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            A+AVA E G+ F  I+   + SK  GE E  ++  F    K  P+++F+DE+D++  +RE     E  R++ ++ +   DG+  K +  ++V+AATNRP  +D A+ R  R  R + + +PDA  R +I+R+     +LA DVDLE   N   G+ G+
Sbjct:  261 ARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAIAPKREKT-NGEVERRIVSQLLTLMDGV--KGRSNLVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGA 415          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 61/161 (37.89%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVA    A FI I  S +  K+ GEG + V+ +F LA + +PS++F+DE+DS+  +R +    G+ E  R +  + +   DG   +   R  +LAATNRP  LD A++R  R  R + V +P A  RE+I+++   K  LA DVDL     + D  SG+
Sbjct:  210 AKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLV-QLLAEMDGFDPRGNVR--ILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGA 367          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
PRS10_YEAST3.826e-2034.3426S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
FTSH_SHIFL3.826e-2036.65Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_ECOLI3.826e-2036.65Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO573.826e-2036.65Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH_AQUAE3.826e-2036.42Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH1_HAEIN3.826e-2037.89Cell division protease ftsH homolog 1 OS=Haemophil... [more]
FIGN_MOUSE3.826e-2031.61Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1[more]
AFG2_SCHPO3.826e-2037.97ATPase family gene 2 protein OS=Schizosaccharomyce... [more]
TERA1_CAEEL6.526e-2036.65Transitional endoplasmic reticulum ATPase homolog ... [more]
PSMR_UNCMA6.526e-2037.89Proteasome-activating nucleotidase OS=Uncultured m... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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