FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 61/168 (36.31%), Postives = 97/168 (57.74%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            AKAVATE+ A FI++  S    K+ GEG + V+ +F +A + APS++F+DE+D++  +R      GE E  R +  + +   DG    D   V ++AATNR   LD A++R  R  R + V LPD   R +I  + L K ++  +++LE    +++G+SG+  K  CV
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLM-QLLAELDGFNPLD--NVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCV 349          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 61/168 (36.31%), Postives = 97/168 (57.74%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            AKAVATE+ A FI++  S    K+ GEG + V+ +F +A + APS++F+DE+D++  +R      GE E  R +  + +   DG    D   V ++AATNR   LD A++R  R  R + V LPD   R +I  + L K ++  +++LE    +++G+SG+  K  CV
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLM-QLLAELDGFNPLD--NVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCV 349          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 61/168 (36.31%), Postives = 97/168 (57.74%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            AKAVATE+ A FI++  S    K+ GEG + V+ +F +A + APS++F+DE+D++  +R      GE E  R +  + +   DG    D   V ++AATNR   LD A++R  R  R + V LPD   R +I  + L K ++  +++LE    +++G+SG+  K  CV
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLM-QLLAELDGFNPLD--NVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCV 349          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 61/168 (36.31%), Postives = 97/168 (57.74%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            AKAVATE+ A FI++  S    K+ GEG + V+ +F +A + APS++F+DE+D++  +R      GE E  R +  + +   DG    D   V ++AATNR   LD A++R  R  R + V LPD   R +I  + L K ++  +++LE    +++G+SG+  K  CV
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLM-QLLAELDGFNPLD--NVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCV 349          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 61/168 (36.31%), Postives = 97/168 (57.74%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            AKAVATE+ A FI++  S    K+ GEG + V+ +F +A + APS++F+DE+D++  +R      GE E  R +  + +   DG    D   V ++AATNR   LD A++R  R  R + V LPD   R +I  + L K ++  +++LE    +++G+SG+  K  CV
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLM-QLLAELDGFNPLD--NVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCV 349          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 61/168 (36.31%), Postives = 97/168 (57.74%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            AKAVATE+ A FI++  S    K+ GEG + V+ +F +A + APS++F+DE+D++  +R      GE E  R +  + +   DG    D   V ++AATNR   LD A++R  R  R + V LPD   R +I  + L K ++  +++LE    +++G+SG+  K  CV
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLM-QLLAELDGFNPLD--NVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCV 349          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 59/164 (35.98%), Postives = 90/164 (54.88%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK 478
            AKAVA  A A FI ++   +  K+ GEG + V+ +F LA + APS++F+DE+D++  RR      G+ E  R +  + +   DG    D   + V+AATNR   LD A++R  R  R + + LPD   R +I ++      LA DVDL+    + +G SG+  K
Sbjct:  230 AKAVANHADATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTL-TQLLAEMDGFDPLDD--IKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIK 390          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: NVL_MOUSE (Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 61/153 (39.87%), Postives = 89/153 (58.17%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVIL---AKEELASDVDLEGNCN 445
            AKAVA E+G NFI++    + + + GE E+ V+ VF  A   AP V+F DEVD++  RR +  E  A  ++ N+ +   DGL T  +++V +LAATNRP  +D A++R  RL + L V LP   +R  I++ I     K  L  DV+LE   N
Sbjct:  631 AKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD-RETGASVRVVNQLLTEMDGLET--RQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIAN 780          

HSP 2 Score: 70.8626 bits (172), Expect = 3.835e-12
Identity = 47/159 (29.56%), Postives = 80/159 (50.31%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            A A+A E     + ++   I S   GE E+ ++ +F  A   AP +VF+DE+D++  +RE     +  R++  + +   D L       RVLV+ ATNRP  LD A+ R  R  R + + +PD   RE+I++ +  K  L    +     ++  G+ G+
Sbjct:  314 AHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCIVFIDEIDAITPKRE-VASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREVCLGIPDEAARERILQTLCRKLRLPETFNFCHLAHLTPGFVGA 471          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.523e-20
Identity = 61/168 (36.31%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            AKAVATE+ A FI++  S    K+ GEG + V+ +F +A + APS++F+DE+D++  +R      GE E  R +  + +   DG    D   V ++AATNR   LD A++R  R  R + V LPD   R +I  + L K ++  +++LE    + +G+SG+  K  CV
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLM-QLLAELDGFDPLD--NVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCV 349          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.523e-20
Identity = 59/158 (37.34%), Postives = 90/158 (56.96%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            A+AVA EAG  F + S S     + G G + V+ +F+ A K +P ++F+DE+D++ G R NP + + MR   N+ +V  DG   K  E ++V+AATN P  LD+A+VR  R  R ++V  PD   R +I+   + K   + DVDL        G+SG+
Sbjct:  273 ARAVAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFMDEIDAIGGSR-NPKDQQYMRMTLNQLLVELDGF--KQNEGIIVIAATNFPQSLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVDLMIIARGTPGFSGA 427          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
PSMR_SULIY6.526e-2036.31Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN6.526e-2036.31Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM6.526e-2036.31Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL6.526e-2036.31Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK6.526e-2036.31Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA6.526e-2036.31Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_METKA6.526e-2035.98Proteasome-activating nucleotidase OS=Methanopyrus... [more]
NVL_MOUSE6.526e-2039.87Nuclear valosin-containing protein-like OS=Mus mus... [more]
PSMR_SULSO8.523e-2036.31Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
FTSH4_ORYSJ8.523e-2037.34Cell division protease ftsH homolog 4, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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