FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10284 contig Ccv1_Contig10284:1..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.890e-35
Identity = 78/158 (49.37%), Postives = 111/158 (70.25%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGNCNMADGYSGS 469
            A+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L       DGYSGS
Sbjct:  545 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLSRLLQKQGSPLDTEALRRLAKTTDGYSGS 701          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.468e-35
Identity = 74/157 (47.13%), Postives = 113/157 (71.97%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGNCNMADGYSGS 469
            AKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS++F+DEVDS+L R    GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L     + DGYSGS
Sbjct:  389 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLL-RERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARLTDGYSGS 544          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.468e-35
Identity = 77/158 (48.73%), Postives = 112/158 (70.89%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGNCNMADGYSGS 469
            A+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L     + +GYSGS
Sbjct:  552 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITEGYSGS 708          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.210e-35
Identity = 78/160 (48.75%), Postives = 114/160 (71.25%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMA---DGYSGS 469
            A+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    + +R++VLAATNRP +LDEA +RR  +R+ V+LP+   RE ++  +L K+   S +D E    +A   DGYSGS
Sbjct:  540 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPEVQTRELLLSRLLQKQ--GSPLDTEALARLAKITDGYSGS 696          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.210e-35
Identity = 74/157 (47.13%), Postives = 113/157 (71.97%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGNCNMADGYSGS 469
            AKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L     M +GYSGS
Sbjct:  390 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTNGYSGS 545          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.210e-35
Identity = 72/161 (44.72%), Postives = 108/161 (67.08%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-----TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVATE G  F N+S +S+TSK+ GE EK V+ +F +A   APS +F+DE+DS+  +R    EHEA R++K+E ++  DG+       +  + V+VLAATN P+D+DEA+ RRL +R+ + LP+   RE+++R+ L +  LA D+DL+      DGYSG+
Sbjct:  284 AKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPSTIFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGA 444          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.499e-35
Identity = 73/157 (46.50%), Postives = 115/157 (73.25%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGNCNMADGYSGS 469
            AKAVA E+ A F NIS +S+TSK+ GEGEK V+A+FS+A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LD+AV+RR  +R+ V+LP+   R  +++ +L+K+    ++ +L     + +GYSGS
Sbjct:  379 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGS 534          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.499e-35
Identity = 74/157 (47.13%), Postives = 114/157 (72.61%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGNCNMADGYSGS 469
            AKAVA E+ A F NIS +S+TSK+ GEGEK V+A+FS+A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LD+AV+RR  +R+ V LP+   R  +++ +L+K+    S+ +L     + +GYSGS
Sbjct:  376 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGS 531          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.499e-35
Identity = 73/156 (46.79%), Postives = 112/156 (71.79%), Query Frame = 2
Query:    5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGNCNMADGYSGS 469
            K +A ++GA F +IS SS+TSKW GEGEK V+A+F++A    P+V+F+DE+DS+L +R   GEHE+ R++K EF+V  DG  T   +R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  ++AKE  + ++ ++E     ADG+SG+
Sbjct:  434 KCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQR-GEGEHESSRRIKTEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSGA 588          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.499e-35
Identity = 72/156 (46.15%), Postives = 114/156 (73.08%), Query Frame = 2
Query:    5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGNCNMADGYSGS 469
            K +A+++GA F +IS SS+TSKW GEGEK V+A+F++A    P+V+F+DE+DS+L +R + GEHE+ R++K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   SD + +     +DG+SG+
Sbjct:  461 KCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGA 615          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
SPAST_DROAN1.890e-3549.37Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]
SPAST_PIG2.468e-3547.13Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
SPAST_DROWI2.468e-3548.73Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]
SPAST_DROMO4.210e-3548.75Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
SPAST_BOVIN4.210e-3547.13Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
KTNA1_STRPU4.210e-3544.72Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
SPAST_XENTR5.499e-3546.50Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
SPAST_XENLA5.499e-3547.13Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
FIGL1_XENTR5.499e-3546.79Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
FIGL1_MOUSE5.499e-3546.15Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
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