FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.752e-16
Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR---RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL 412
            AKA A E+G  F++IS S     + G G   V+ +F  A + APS++F+DE+D+ +GR   R   G ++      N+ +V  DG  T     V+VLA TNRP  LD+A++R  R  R++ ++ PD   R++I ++ L K +L
Sbjct:  372 AKATAGESGVPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDA-IGRARGRGGLGGNDERESTLNQLLVEMDGFGT--TAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKL 510          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR---RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE----GNCNMADGYSGS 469
            AKA A EA   FI +S S     + G G   V+ +F+LA K AP ++F+DE+D+ +GR   R N G         N+ +V  DG  T     V++LA TNRP  LD A++R  R  R++ +  PD   R  I +V L   +L S ++ E       ++  G+SG+
Sbjct:  359 AKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDA-VGRKRGRGNFGGQSEQENTLNQLLVEMDGFNT--TTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGA 520          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.663e-15
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR----ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK 478
            A+AVA      FI +S S +  K+ GEG + V+ +F +A + APS++F+DE+DS+   R       G+ E  R M  E +   DG    +K  + VL ATNR   LD+A++R  R+ R++    P+  +R  I+++   K  L   +DL+      +G SG+  K
Sbjct:  212 ARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNK--IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELK 373          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.663e-15
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR----ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK 478
            A+AVA      FI +S S +  K+ GEG + V+ +F +A + APS++F+DE+DS+   R       G+ E  R M  E +   DG    +K  + VL ATNR   LD+A++R  R+ R++    P+  +R  I+++   K  L   +DL+      +G SG+  K
Sbjct:  212 ARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNK--IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELK 373          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.663e-15
Identity = 54/168 (32.14%), Postives = 93/168 (55.36%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            A+A A +  A F+ ++   +   + G+G K V+  F+LA + APS++F+DE+D++  +R   E  G+ E  R M  E +   DG   +   +V V+AATNR   LD A++R  RL R++   +P+   R +I+++   K  ++ DV+ E      D ++G+  K  CV
Sbjct:  237 ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTML-ELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 401          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.663e-15
Identity = 54/168 (32.14%), Postives = 93/168 (55.36%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            A+A A +  A F+ ++   +   + G+G K V+  F+LA + APS++F+DE+D++  +R   E  G+ E  R M  E +   DG   +   +V V+AATNR   LD A++R  RL R++   +P+   R +I+++   K  ++ DV+ E      D ++G+  K  CV
Sbjct:  237 ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTML-ELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 401          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.172e-15
Identity = 52/147 (35.37%), Postives = 78/147 (53.06%), Query Frame = 2
Query:    5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 433
            KAVA    A FI ++ S    K+ GEG + V+ VF LA + APS+VF+DEVDS+  +R   +      ++++  E +   DG        V V+ ATNR   +D A++R  RL R++   LPD   +  +   I +K  L   VD+E
Sbjct:  186 KAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDASTSADREVQRVLIELLNQMDGF--DPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIE 330          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.172e-15
Identity = 55/161 (34.16%), Postives = 85/161 (52.80%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EA   F +IS S     + G G   V+ +F    + AP ++F+DE+D+ +GR       G ++   +  N+ +V  DG      E V+++AATNRP  LD A++R  R  R++ V  PD   RE+I++V L K +  S V          G+SG+
Sbjct:  205 AKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDA-VGRHRGIGMGGGNDEREQTLNQMLVEMDGFEA--NEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGA 362          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.172e-15
Identity = 55/161 (34.16%), Postives = 85/161 (52.80%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EA   F +IS S     + G G   V+ +F    + AP ++F+DE+D+ +GR       G ++   +  N+ +V  DG      E V+++AATNRP  LD A++R  R  R++ V  PD   RE+I++V L K +  S V          G+SG+
Sbjct:  205 AKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDA-VGRHRGIGMGGGNDEREQTLNQMLVEMDGFEA--NEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGA 362          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.172e-15
Identity = 55/161 (34.16%), Postives = 85/161 (52.80%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EA   F +IS S     + G G   V+ +F    + AP ++F+DE+D+ +GR       G ++   +  N+ +V  DG      E V+++AATNRP  LD A++R  R  R++ V  PD   RE+I++V L K +  S V          G+SG+
Sbjct:  205 AKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDA-VGRHRGIGMGGGNDEREQTLNQMLVEMDGFEA--NEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGA 362          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
FTSH3_ARATH9.752e-1636.62Cell division protease ftsH homolog 3, mitochondri... [more]
AFG32_BOVIN1.274e-1535.15AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
PRS8B_ARATH1.663e-1533.3326S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8A_ARATH1.663e-1533.3326S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS6A_RAT1.663e-1532.1426S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN1.663e-1532.1426S protease regulatory subunit 6A OS=Homo sapiens... [more]
PRS6B_ENCCU2.172e-1535.3726S protease regulatory subunit 6B homolog OS=Ence... [more]
FTSH_RICTY2.172e-1534.16Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICPR2.172e-1534.16Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICFE2.172e-1534.16Cell division protease ftsH homolog OS=Rickettsia ... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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