FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.172e-15
Identity = 55/161 (34.16%), Postives = 85/161 (52.80%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EA   F +IS S     + G G   V+ +F    + AP ++F+DE+D+ +GR       G ++   +  N+ +V  DG      E V+++AATNRP  LD A++R  R  R++ V  PD   RE+I++V L K +  S V          G+SG+
Sbjct:  205 AKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDA-VGRHRGIGMGGGNDEREQTLNQMLVEMDGFEA--NEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGA 362          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVD 427
            AKAVA++  A+FI ++ S +  K+ GEG K V+ +F +A    P+VVF+DE+D++  +R   +  G+ E  R M  + +   DG    ++  + ++AATNR   LD A++R  R  R + V  P+   REKI R+      +A  VD
Sbjct:  200 AKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDHEPAVVFIDEIDAIASKRTDSKTSGDAEVQRTMM-QLLSEMDGF--DERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVD 343          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 57/160 (35.62%), Postives = 82/160 (51.25%), Query Frame = 2
Query:    5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL-MVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            KAVA    A FI ++ S    K+ GEG + V+ VF LA + APS++F+DEVDS+  +R     G    ++++  E +   DG        V V+ ATNR   LD A++R  RL R++    L D   R  I   I +K  LA + DL+      D  SG+
Sbjct:  224 KAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF--DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPYLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGA 381          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX1_MOUSE (Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 56/163 (34.36%), Postives = 91/163 (55.83%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK 478
            A  VA E+G NFI+I    + SK+ G  E+ V+ VF  A    P ++F DE +S+  RR  +N G  +   ++ N+ +   DG+  +  + V VLAAT+RP  +D A++R  RL + +    PD  +R +I+ V+     LA DVDL+   ++ D ++G+  K
Sbjct:  892 AGVVARESGMNFISIKGPELLSKYIGASEQAVRDVFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTD---RVVNQLLTQLDGV--EGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLALADDVDLQHVASVTDSFTGADLK 1049          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KATL2_XENLA (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR-ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL------AKEELASDVDLEGNCNMADGYSGS 469
            AKAVATE    F NIS S+I SKW G+ EK V+ +F LA   APS +F+DE++S++ +R   PGE                                     LD A++RRL +R++V+LP    R+ +I+  L      +  EL  D+D        DGYSGS
Sbjct:  308 AKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTGPGE-------------------------------------LDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPISNSSGVELRMDLDYSTLGEETDGYSGS 433          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 57/165 (34.55%), Postives = 86/165 (52.12%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR---RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE----GNCNMADGYSGS 469
            AKA A EA   FI +S S     + G G   V+ +F+LA K AP ++F+DE+D+ +GR   R N G         N+ +V  DG  T     V++LA TNRP  LD A++R  R  R++ +  PD   R  I +V L   +L S ++ +       ++  G+SG+
Sbjct:  358 AKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDA-VGRKRGRGNFGGQSEQENTLNQLLVEMDGFNT--TTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGA 519          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 51/158 (32.28%), Postives = 86/158 (54.43%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            A+A A EAG +F  +S S     + G G K ++ +F+ A   AP+++F+DE+D++ G+R NP +    ++  N+ +V  DG        ++++ ATN P  LD+A+ R  R  + + V+LPD   R  I++  + K  LA +VD         G SG+
Sbjct:  331 ARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKR-NPKDQAYAKQTLNQLLVELDGF--SQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGA 485          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 56/163 (34.36%), Postives = 87/163 (53.37%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDV-DLEGN-CNMADGYSGS 469
            AKA A EAG  F  +S S     + G G   V+ +F  A + APS+VF+DE+D++   R+     G ++      N+ +V  DG    D   V+VLA TNRP  LD+A++R  R  R + ++ P+   R+ I  V L   +LA ++ DL+     +  G+SG+
Sbjct:  398 AKATAGEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDERENTLNQMLVEMDGFTPAD--HVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGA 558          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN----PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK 478
            A+AVA      FI +S S +  K+ GEG + V+ +F +A + APS++F+DE+DS+   R +     G+ E  R M  E +   DG      + + V+ ATNR   LD A++R  R+ R++    P A  R +I+R+      L   +DL+      +G SG+  K
Sbjct:  196 ARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTML-ELLNQLDGFEA--TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELK 357          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 50/148 (33.78%), Postives = 83/148 (56.08%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREK---IIRVILAKEELASDVDLE 433
            AKA+AT    NF ++    + + + GE E  V+ VF  A    P V+F DEVDS+  +R N G+    M ++ ++ +   DG+ + D + V ++ ATNRP  LDEA++R      ++ L  A  REK   I+R +  K +++SD++ +
Sbjct:  768 AKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDEVDSVAPKRGNQGDSGGVMDRIVSQLLAELDGM-SSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQANIMRALTRKFKVSSDINFD 914          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
FTSH_RICCN2.172e-1534.16Cell division protease ftsH homolog OS=Rickettsia ... [more]
PSMR2_HALSA2.837e-1535.37Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS6B_YEAST2.837e-1535.6326S protease regulatory subunit 6B homolog OS=Sacc... [more]
PEX1_MOUSE2.837e-1534.36Peroxisome biogenesis factor 1 OS=Mus musculus GN=... [more]
KATL2_XENLA2.837e-1534.97Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
AFG32_HUMAN2.837e-1534.55AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
YME1_YEAST3.706e-1532.28Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
RCA1_YEAST3.706e-1534.36Mitochondrial respiratory chain complexes assembly... [more]
PRS8_SCHPO3.706e-1532.7326S protease regulatory subunit 8 homolog OS=Schiz... [more]
PEX6_CANGA3.706e-1533.78Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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