FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN----PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL 412
            AKA A EA   F+++S S     + G G   V+ +F+ A  +APS++F+DE+D++   R       G ++      N+ +V  DG  T D  +V+VLA TNRP  LD A++R  R  R + ++ PD   R++I  V L +  L
Sbjct:  338 AKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALGGANDEREATLNQLLVEMDGFTTSD--QVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVNGRQQIYLVHLKRLNL 478          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 57/165 (34.55%), Postives = 86/165 (52.12%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR---RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE----GNCNMADGYSGS 469
            AKA A EA   FI +S S     + G G   V+ +F+LA K AP ++F+DE+D+ +GR   R N G         N+ +V  DG  T     V++LA TNRP  LD A++R  R  R++ +  PD   R  I +V L   +L S ++ +       ++  G+SG+
Sbjct:  357 AKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDA-VGRKRGRGNFGGQSEQENTLNQLLVEMDGFNT--TTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGA 518          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.840e-15
Identity = 52/163 (31.90%), Postives = 87/163 (53.37%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK 478
            A+AVA      FI +S S +  K+ GEG + V+ +F +A + APS++F+DE+DS+   R   N G    +++   E +   DG  + +   + V+ ATNR   LD A++R  R+ R++    P+   R +I+++   K  L   +DLE   +   G SG+  K
Sbjct:  247 ARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRELFIMAREHAPSIIFMDEIDSIGSTRGDSNKGSDSEVQRTMLELLNQLDGFESHN--NIKVIMATNRIDILDPALLRTGRIDRKIEFPPPNESARLEILKIHSRKMNLTKGIDLETIASKMVGCSGAEVK 407          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.840e-15
Identity = 50/142 (35.21%), Postives = 80/142 (56.34%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM---LGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL 412
            AKA A E+   F++IS S     + G G   V+ +F  A + APS++F+DE+D++    GR    G ++      N+ +V  DG  T     V+VLA TNRP  LD+A++R  R  R++ ++ PD   R++I ++ L K +L
Sbjct:  377 AKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGT--TAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKL 516          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.321e-15
Identity = 54/168 (32.14%), Postives = 88/168 (52.38%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            A+A A +  A F+ ++   +   + G+G K V+  F LA + AP ++F+DE+D++  +R   E  G+ E  R M  E +   DG      ER+ V+AATNR   LD A++R  RL R++    P    R +I+++   K  +  DV+ E      D ++G+  K  CV
Sbjct:  222 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGF--SSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCV 386          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.321e-15
Identity = 54/168 (32.14%), Postives = 88/168 (52.38%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            A+A A +  A F+ ++   +   + G+G K V+  F LA + AP ++F+DE+D++  +R   E  G+ E  R M  E +   DG      ER+ V+AATNR   LD A++R  RL R++    P    R +I+++   K  +  DV+ E      D ++G+  K  CV
Sbjct:  222 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGF--SSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCV 386          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.321e-15
Identity = 51/161 (31.68%), Postives = 87/161 (54.04%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EAG  F +IS S     + G G   V+ +F  A + +P +VF+DE+D+ +GR+      G ++   +  N+ +   DG   +    ++++AATNR   LD A++R  R  R++ V++PD   R +I+ V    ++L   + LE       G+SG+
Sbjct:  223 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDA-VGRQRGTGIGGGNDEREQTLNQLLTEMDGF--EGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVKGRLEILNVHARNKKLDLSISLELIAKRTPGFSGA 380          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 51/164 (31.10%), Postives = 88/164 (53.66%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSKTCV 487
            AKAV+ EA   F+  S SS      G G   ++ +F+ A + +P +VF+DE+DS+ G R     H    +  N+ +   DG ++  KE ++VL ATN+   LD+A++R  R   ++ V+ P    R  ++ + L K +  S++D+E   +   GY+G+  +  V
Sbjct:  216 AKAVSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSVGGNRTFSPHHPFANQTINQLLAEMDGFQS--KEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLV 377          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 50/161 (31.06%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVA +  A+FI ++ S +  K+ GEG + V+ +F LA +  P+++F+DE+D++  +R   +  G+ E  R M  + +   DG    ++  + ++AATNR   LD A++R  R  R + V  P+   RE+I+ +   +  +A  VD          +SG+
Sbjct:  203 AKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFELAEQKDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMM-QLLSEMDGF--DERGDIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPNPDARERILEIHAGEMNVADSVDFSDLAADTAEFSGA 360          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 53/160 (33.12%), Postives = 84/160 (52.50%), Query Frame = 2
Query:    5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL-MVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            KAVA    ANFI +  S    K+ GEG + V+ VF +A + AP+++F+DE+D++  +R     G    ++++  E +   DG        V V+ ATNR   LD A++R  RL R++   +  D   R  + + I AK  L+ +VDL+      D  SG+
Sbjct:  186 KAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGF--DQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGA 343          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
AFG3_YEAST3.706e-1534.97Mitochondrial respiratory chain complexes assembly... [more]
AFG32_MOUSE3.706e-1534.55AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
PRS8_ENCCU4.840e-1531.9026S protease regulatory subunit 8 homolog OS=Encep... [more]
FTSHA_ARATH4.840e-1535.21Cell division protease ftsH homolog 10, mitochondr... [more]
PS6AA_ARATH6.321e-1532.1426S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_BRACM6.321e-1532.1426S protease regulatory subunit 6A homolog OS=Bras... [more]
FTSH_GUITH6.321e-1531.68Cell division protease ftsH homolog OS=Guillardia ... [more]
YME1_SCHMA8.255e-1531.10Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
PSMR1_HALSA8.255e-1531.06Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PRS6B_SCHPO8.255e-1533.1326S protease regulatory subunit 6B homolog OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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