FC875636
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15 Identity = 52/149 (34.90%), Postives = 81/149 (54.36%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHE-AMRKMKNEFMVNWDGLRTKD-KERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNRE-KIIRVILAKEELASDVDLE 433 AKA+AT NF ++ + + + GE E V+ VF A P VVF DE+DS+ +R N G+ E M ++ ++ + DG+ D + V V+ ATNRP LDEA++R R + L + + D ++ KI+ + K L VDL+ Sbjct: 869 AKAIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQGDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEALSRKFHLHPSVDLD 1017
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15 Identity = 52/161 (32.30%), Postives = 85/161 (52.80%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAM---RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469 AKA A A A+F ++S + + S + GEGE ++ F A +PS++F DE D + +R + + ++ + + DGL ++ + +LVLAATNRP+ +D A++R R L V PD R +I++V L DVDL D ++G+ Sbjct: 337 AKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGL--EEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTGA 495 HSP 2 Score: 68.1662 bits (165), Expect = 2.486e-11 Identity = 51/161 (31.68%), Postives = 82/161 (50.93%), Query Frame = 2 Query: 5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469 +AV E A+ I +S S+ GE EK ++ F+ AS A PSV+F+DE+D + RR+ E + +R F + + RV+V+A+TNR +D A+ R R + V+ P+ +R KI+++ K L VDL+ +GY G+ Sbjct: 74 RAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRDARREQD-VRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNGYVGA 233
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14 Identity = 54/164 (32.93%), Postives = 81/164 (49.39%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSKTCV 487 A+AVA EA F S S + G G ++ +F A AP V+F+DE+DS+ G+R H R+ N+ + DG K E V+++ ATN P LD A++R R ++ V PD R +I++ L K + VD E G+SG+ + V Sbjct: 331 ARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF--KPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLV 492
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14 Identity = 54/164 (32.93%), Postives = 81/164 (49.39%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSKTCV 487 A+AVA EA F S S + G G ++ +F A AP V+F+DE+DS+ G+R H R+ N+ + DG K E V+++ ATN P LD A++R R ++ V PD R +I++ L K + VD E G+SG+ + V Sbjct: 389 ARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF--KPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLV 550
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14 Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469 A+AVA + A+F+ + S + K+ GEG + V+ +F LA K +PS++F+DE+D++ R G+ E R + + + DG + R ++ ATNR LD A++R R R + + PD R I+ + A + VD+ DG +G+ Sbjct: 204 ARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELFELAKKKSPSIIFIDEIDAIGASRTESNTSGDREVHRTLM-QLLAEMDGFSNRGDVR--IIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGA 361
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14 Identity = 53/168 (31.55%), Postives = 89/168 (52.98%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487 A+A A + A F+ ++ + + G+G K V+ F LA + +P ++F+DE+D++ +R E G+ E R M E + DG + D R+ V+AATNR LD A++R RL R++ P R +I+++ K + DV+ E D ++G+ K CV Sbjct: 221 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDD--RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCV 385
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14 Identity = 53/168 (31.55%), Postives = 88/168 (52.38%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487 A+A A + A F+ ++ + + G+G K V+ F LA + +P ++F+DE+D++ +R E G+ E R M E + DG ER+ V+AATNR LD A++R RL R++ P R +I+++ K + DV+ E D ++G+ K CV Sbjct: 227 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGF--SSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCV 391
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14 Identity = 47/159 (29.56%), Postives = 81/159 (50.94%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK 478 A+A+ATE ++FI + + + G+ K ++ ++ AS+ AP +VF+DE+D++ RE + ++ N + DG+ K+ E V+ +AATN P LD A+ R + LP+ R KI+ + K L +L+ G+SG K Sbjct: 171 ARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGI--KENEGVVTIAATNNPAMLDPAIRSRFEEEIEFKLPNDEERLKIMELYAKKMPLPVKANLKEFVEKTKGFSGRDIK 327
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14 Identity = 53/168 (31.55%), Postives = 90/168 (53.57%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487 A+A A + A F+ ++ + + G+G K V+ F LA + +P ++F+DE+D++ +R E G+ E R M E + DG + D R+ V+AATNR LD A++R RL R++ P R +I+++ K + +DV+ E D ++G+ K CV Sbjct: 221 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDD--RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCV 385
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14 Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469 AKA+A EA F +IS S + G G V+ +F A AP +VF+DE+D+ +GR+ G ++ + N+ + DG + V+V+AATNR LD A++R R R++ V++PD R I+ V +++ V LE G+SG+ Sbjct: 223 AKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDA-VGRQRGTGVGGGNDEREQTLNQLLTEMDGF--EGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFKGRLAILEVHAKNKKMEPKVSLETIARRTPGFSGA 380 The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 348
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bpback to top |