FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 52/149 (34.90%), Postives = 81/149 (54.36%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHE-AMRKMKNEFMVNWDGLRTKD-KERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNRE-KIIRVILAKEELASDVDLE 433
            AKA+AT    NF ++    + + + GE E  V+ VF  A    P VVF DE+DS+  +R N G+ E  M ++ ++ +   DG+   D  + V V+ ATNRP  LDEA++R  R  + L + + D   ++ KI+  +  K  L   VDL+
Sbjct:  869 AKAIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQGDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEALSRKFHLHPSVDLD 1017          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.255e-15
Identity = 52/161 (32.30%), Postives = 85/161 (52.80%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAM---RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA A  A A+F ++S + + S + GEGE  ++  F  A   +PS++F DE D +  +R +     +     ++ +  +   DGL  ++ + +LVLAATNRP+ +D A++R  R    L V  PD   R +I++V      L  DVDL       D ++G+
Sbjct:  337 AKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGL--EEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTGA 495          

HSP 2 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 51/161 (31.68%), Postives = 82/161 (50.93%), Query Frame = 2
Query:    5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            +AV  E  A+ I +S  S+     GE EK ++  F+ AS  A    PSV+F+DE+D +  RR+   E + +R     F +      +    RV+V+A+TNR   +D A+ R  R    + V+ P+  +R KI+++   K  L   VDL+      +GY G+
Sbjct:   74 RAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRDARREQD-VRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNGYVGA 233          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14
Identity = 54/164 (32.93%), Postives = 81/164 (49.39%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSKTCV 487
            A+AVA EA   F   S S     + G G   ++ +F  A   AP V+F+DE+DS+ G+R     H   R+  N+ +   DG   K  E V+++ ATN P  LD A++R  R   ++ V  PD   R +I++  L K +    VD E       G+SG+  +  V
Sbjct:  331 ARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF--KPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLV 492          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14
Identity = 54/164 (32.93%), Postives = 81/164 (49.39%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSKTCV 487
            A+AVA EA   F   S S     + G G   ++ +F  A   AP V+F+DE+DS+ G+R     H   R+  N+ +   DG   K  E V+++ ATN P  LD A++R  R   ++ V  PD   R +I++  L K +    VD E       G+SG+  +  V
Sbjct:  389 ARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGF--KPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLV 550          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            A+AVA +  A+F+ +  S +  K+ GEG + V+ +F LA K +PS++F+DE+D++   R      G+ E  R +  + +   DG   +   R  ++ ATNR   LD A++R  R  R + +  PD   R  I+ +  A   +   VD+       DG +G+
Sbjct:  204 ARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELFELAKKKSPSIIFIDEIDAIGASRTESNTSGDREVHRTLM-QLLAEMDGFSNRGDVR--IIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGA 361          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14
Identity = 53/168 (31.55%), Postives = 89/168 (52.98%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            A+A A +  A F+ ++   +   + G+G K V+  F LA + +P ++F+DE+D++  +R   E  G+ E  R M  E +   DG  + D  R+ V+AATNR   LD A++R  RL R++    P    R +I+++   K  +  DV+ E      D ++G+  K  CV
Sbjct:  221 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDD--RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCV 385          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14
Identity = 53/168 (31.55%), Postives = 88/168 (52.38%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            A+A A +  A F+ ++   +   + G+G K V+  F LA + +P ++F+DE+D++  +R   E  G+ E  R M  E +   DG      ER+ V+AATNR   LD A++R  RL R++    P    R +I+++   K  +  DV+ E      D ++G+  K  CV
Sbjct:  227 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGF--SSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCV 391          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14
Identity = 47/159 (29.56%), Postives = 81/159 (50.94%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK 478
            A+A+ATE  ++FI +    +  +  G+  K ++ ++  AS+ AP +VF+DE+D++   RE       + ++ N  +   DG+  K+ E V+ +AATN P  LD A+  R    +   LP+   R KI+ +   K  L    +L+       G+SG   K
Sbjct:  171 ARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGI--KENEGVVTIAATNNPAMLDPAIRSRFEEEIEFKLPNDEERLKIMELYAKKMPLPVKANLKEFVEKTKGFSGRDIK 327          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 53/168 (31.55%), Postives = 90/168 (53.57%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            A+A A +  A F+ ++   +   + G+G K V+  F LA + +P ++F+DE+D++  +R   E  G+ E  R M  E +   DG  + D  R+ V+AATNR   LD A++R  RL R++    P    R +I+++   K  + +DV+ E      D ++G+  K  CV
Sbjct:  221 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDD--RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCV 385          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKA+A EA   F +IS S     + G G   V+ +F  A   AP +VF+DE+D+ +GR+      G ++   +  N+ +   DG   +    V+V+AATNR   LD A++R  R  R++ V++PD   R  I+ V    +++   V LE       G+SG+
Sbjct:  223 AKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDA-VGRQRGTGVGGGNDEREQTLNQLLTEMDGF--EGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFKGRLAILEVHAKNKKMEPKVSLETIARRTPGFSGA 380          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
PEX6_PICPA8.255e-1534.90Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
CD48B_ARATH8.255e-1532.30Cell division control protein 48 homolog B OS=Arab... [more]
YMEL1_MOUSE1.078e-1432.93ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
YMEL1_HUMAN1.078e-1432.93ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
PSMR_METPE1.078e-1430.43Proteasome-activating nucleotidase OS=Methanosphae... [more]
PRS6A_SOLLC1.078e-1431.5526S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ1.078e-1431.5526S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS2_METJA1.078e-1429.56Putative 26S protease regulatory subunit homolog M... [more]
PS6AB_ARATH1.408e-1431.5526S protease regulatory subunit 6A homolog B OS=Ar... [more]
FSTH_PORYE1.408e-1432.92Cell division protease ftsH homolog OS=Porphyra ye... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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