FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX6_GLOLA (Peroxisomal biogenesis factor 6 OS=Glomerella lagenarium GN=PEX6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 50/149 (33.56%), Postives = 78/149 (52.35%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTKDKER--VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNRE-KIIRVILAKEELASDVDL 430
            AKA+ATE   NF ++    + + + GE E  V+ VF  A    P VVF DE+DS+  +R N G+    M ++ ++ +   DG+   D     V V+ ATNRP  LD A++R  R  + L + + D  +++ KI+  +  K  L   V L
Sbjct: 1044 AKAIATEYSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGDDTSGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQLKILEALTRKFTLHPSVSL 1192          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.916e-13
Identity = 51/149 (34.23%), Postives = 76/149 (51.01%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 433
            A+AVA    A FI +  S +  K+ GEG + V+ +F +A      +VF DEVD++ G R +    G++E  R M  E +   DG   +    + VL ATNRP  LD A++R  RL R++   LPD   R +I ++         D+  E
Sbjct:  219 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARG--NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFE 364          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.916e-13
Identity = 51/149 (34.23%), Postives = 76/149 (51.01%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 433
            A+AVA    A FI +  S +  K+ GEG + V+ +F +A      +VF DEVD++ G R +    G++E  R M  E +   DG   +    + VL ATNRP  LD A++R  RL R++   LPD   R +I ++         D+  E
Sbjct:  219 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARG--NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFE 364          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.916e-13
Identity = 48/168 (28.57%), Postives = 91/168 (54.17%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK-TCV 487
            A+A A +  + ++ ++   +   + G+G K V+  F+LA +  P+++F+DE+D++  +R   E  G+ E  R M  E +   DG        + V+AATNR   LD A++R  RL R++   LP+   R  I+++   K  +++DV+ +     ++ ++G+  K  CV
Sbjct:  219 ARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGF--SSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCV 383          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.727e-13
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRV 391
            A+AVA    A FI +  S +  K+ GEG + V+ +F +A      ++F DE+D++ G R +    G++E  R M  E +   DG     +  + V+ ATNRP  LD A++R  R+ R++  +LPD   R  I R+
Sbjct:  260 ARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTML-ELITQLDGF--DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRI 391          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 7.727e-13
Identity = 49/149 (32.89%), Postives = 78/149 (52.35%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 433
            A+AVA    A FI +  S +  K+ GEG + V+ +F +A      ++F DE+D++ G R +    G++E  R M  E +   DG     +  + VL ATNRP  LD A++R  RL R++  +LPD   R  I+++      +  D+  E
Sbjct:  226 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML-ELINQLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFE 371          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.009e-12
Identity = 49/167 (29.34%), Postives = 85/167 (50.90%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE---------LASDVDLEGNCNMADGYSGS 469
            A AVA + G NFI++    I +K+ G  E+ ++ +F  A  + P ++F DE DS+  +R +       R + N+ +   DG    D   V +LAAT+RP  +D A++R  RL + ++ N+P    R  I++ I+  ++         L  + DL+       G+SG+
Sbjct:  748 ASAVAQQCGLNFISVKGPEILNKFIGASEQNIRELFERAQSVKPCILFFDEFDSIAPKRGHDSTGVTDR-VVNQLLTQMDGAEGLD--GVYILAATSRPDLIDSALLRPGRLDKSVICNIPTESERLDILQAIVNSKDKDTGQKKFALEKNADLKLIAEKTAGFSGA 911          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 433
            A+AVA    A FI +  S +  K+ GEG + V+ +F +A      ++F DE+D++ G R +    G++E  R M  E +   DG     +  + VL ATNRP  LD A++R  RL R++  +LPD   R  I ++      +  D+  E
Sbjct:  226 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML-ELINQLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFE 371          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 433
            A+AVA    A FI +  S +  K+ GEG + V+ +F +A      ++F DE+D++ G R +    G++E  R M  E +   DG     +  + VL ATNRP  LD A++R  RL R++  +LPD   R  I ++      +  D+  E
Sbjct:  226 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML-ELINQLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFE 371          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 433
            A+AVA    A FI +  S +  K+ GEG + V+ +F +A      ++F DE+D++ G R +    G++E  R M  E +   DG     +  + VL ATNRP  LD A++R  RL R++  +LPD   R  I ++      +  D+  E
Sbjct:  226 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML-ELINQLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFE 371          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
PEX6_GLOLA4.530e-1333.56Peroxisomal biogenesis factor 6 OS=Glomerella lage... [more]
PRS7_SPIOL5.916e-1334.2326S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_ORYSJ5.916e-1334.2326S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS6A_DICDI5.916e-1328.5726S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS7_YEAST7.727e-1334.0726S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS7_PONAB7.727e-1332.8926S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PEX1_YEAST1.009e-1229.34Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
PRS7_XENLA1.318e-1232.8926S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS7_MOUSE1.318e-1232.8926S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA1.318e-1232.8926S protease regulatory subunit 7 OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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