FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 433
            A+AVA    A FI +  S +  K+ GEG + V+ +F +A      ++F DE+D++ G R +    G++E  R M  E +   DG     +  + VL ATNRP  LD A++R  RL R++  +LPD   R  I ++      +  D+  E
Sbjct:  226 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML-ELINQLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFE 371          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 433
            A+AVA    A F+ +  S +  K+ GEG + V+ +F +A      ++F DEVD++ G R +    G++E  R M  E +   DG     +  + VL ATNRP  LD A++R  RL R++   LPD   R  I  +       A D+  E
Sbjct:  221 ARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTML-ELINQLDGF--DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFE 366          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 433
            A+AVA    A FI +  S +  K+ GEG + V+ +F +A      ++F DE+D++ G R +    G++E  R M  E +   DG     +  + VL ATNRP  LD A++R  RL R++  +LPD   R  I ++      +  D+  E
Sbjct:  226 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML-ELINQLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFE 371          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 433
            A+AVA    A FI +  S +  K+ GEG + V+ +F +A      ++F DE+D++ G R +    G++E  R M  E +   DG     +  + VL ATNRP  LD A++R  RL R++  +LPD   R  I ++      +  D+  E
Sbjct:  226 ARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML-ELINQLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFE 371          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.835e-12
Identity = 48/146 (32.88%), Postives = 77/146 (52.74%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDV 424
            A+AVA    A FI +  S +  K+ GEG + V+ +F +A      ++F DE+D++ G R +    G++E  R M  E +   DG     +  + VL ATNRP  LD A++R  RL R++   LPD   R  I+++   +  +  D+
Sbjct:  228 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTML-ELINQLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDI 370          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX6_RAT (Peroxisome assembly factor 2 OS=Rattus norvegicus GN=Pex6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.008e-12
Identity = 46/147 (31.29%), Postives = 80/147 (54.42%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNL-PDAPNREKIIRVILAKEELASDVDL 430
            AKAVATE    F+++    + + + G+ E+ V+ VF+ A   AP ++F DE+DS+   R   G+    M ++ ++ +   DGL +   + V V+ ATNRP  LD A++R  R  + + V    D  ++ +++  I  K +L + V L
Sbjct:  752 AKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHS--TQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSL 896          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX6_MOUSE (Peroxisome assembly factor 2 OS=Mus musculus GN=Pex6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.008e-12
Identity = 46/147 (31.29%), Postives = 80/147 (54.42%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNL-PDAPNREKIIRVILAKEELASDVDL 430
            AKAVATE    F+++    + + + G+ E+ V+ VF+ A   AP ++F DE+DS+   R   G+    M ++ ++ +   DGL +   + V V+ ATNRP  LD A++R  R  + + V    D  ++ +++  I  K +L + V L
Sbjct:  755 AKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHS--TQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSL 899          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX6_HUMAN (Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12
Identity = 46/147 (31.29%), Postives = 79/147 (53.74%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNL-PDAPNREKIIRVILAKEELASDVDL 430
            AKAVATE    F+++    + + + G+ E+ V+ VF+ A   AP ++F DE+DS+   R   G+    M ++ ++ +   DGL +   + V V+ ATNRP  LD A++R  R  + + V    D  ++ +++  I  K +L   V L
Sbjct:  754 AKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHS--TQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSL 898          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.116e-11
Identity = 45/140 (32.14%), Postives = 74/140 (52.86%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE 406
            AKA+ATE   NF ++    + + + GE E  V+ VF  A    P VVF DE+DS+  +R N G+    M ++ ++ +   DG+   +     V V+ ATNRP  LD A++R  R  + L + + D  +++  I   L ++
Sbjct: 1041 AKAIATEYSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRK 1180          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.457e-11
Identity = 54/171 (31.58%), Postives = 86/171 (50.29%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR-------ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA--SDVDLEGNCNMADGYSGSXSKT 481
            AKAVATEA   F+ ++         G G   V+++F  A   AP +V++DE+D++  +R        N  E + +    N+ +V  DG+ T D   V+VLA+TNR   LD A++R  RL R + ++LP    R +I    L   +L   S    +    +  G+SG+  K+
Sbjct:  359 AKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTL----NQLLVEMDGMGTAD--HVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGTAKKS 523          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
PRS7_HUMAN1.318e-1232.8926S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_DICDI1.318e-1233.5626S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS7_BOVIN1.318e-1232.8926S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS7_RAT2.248e-1232.8926S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_CAEEL3.835e-1232.8826S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PEX6_RAT5.008e-1231.29Peroxisome assembly factor 2 OS=Rattus norvegicus ... [more]
PEX6_MOUSE5.008e-1231.29Peroxisome assembly factor 2 OS=Mus musculus GN=Pe... [more]
PEX6_HUMAN8.543e-1231.29Peroxisome assembly factor 2 OS=Homo sapiens GN=PE... [more]
PEX6_NEUCR1.116e-1132.14Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
SPG7_RAT1.457e-1131.58Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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