FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10284 contig Ccv1_Contig10284:1..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FIGL2_HUMAN (Putative fidgetin-like protein 2 OS=Homo sapiens GN=FIGNL2 PE=5 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 46/155 (29.68%), Postives = 82/155 (52.90%), Query Frame = 2
Query:    5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGNCNMADGYSG 466
            + +AT+ GA  + +  +++ +    EG + ++A F+ A    PSV+ + E++++L  R++     A   ++   +   DG      + VLV+  T+RP  LDEA  RR   R  V LPD+P R +I++  LA++  A S+ +L        G+SG
Sbjct:  443 RCLATQLGATLLRLRGATLAAPGAAEGARLLQAAFAAARCRPPSVLLISELEALLPARDDGAA--AGGALQVPLLACLDGGCGAGADGVLVVGTTSRPAALDEATRRRFSLRFYVALPDSPARGQILQRALAQQGCALSERELAALVQGTQGFSG 595          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: YHI5_SCHPO (Uncharacterized AAA domain-containing protein P22H7.05c OS=Schizosaccharomyces pombe GN=SPBP22H7.05c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 2
Query:   53 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRV 391
            S   SKW GE E+ ++ +F  A ++ PS++F DE+D +   R +  E +    + +  +   DGL T+   +V+V+ ATNRP DLD A+ R  R  R     LP+   R KI+ +
Sbjct:  445 SDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQE-QTHSSIVSTLLALMDGLDTRG--QVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKILEI 556          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 53/167 (31.74%), Postives = 84/167 (50.30%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR-------ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA--SDVDLEGNCNMADGYSGS 469
            AKAVATEA   F+ ++         G G   V+++F  A   AP +V++DE+D++  +R        N  E + +    N+ +V  DG+ T D   V+VLA+TNR   LD A++R  RL R + ++LP    R +I    L   +L   S    +    +  G+SG+
Sbjct:  359 AKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTL----NQLLVEMDGMGTTD--HVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGA 519          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 53/167 (31.74%), Postives = 85/167 (50.90%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR-------ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL--ASDVDLEGNCNMADGYSGS 469
            AKAVATEA   F+ ++         G G   V+++F  A   AP +V++DE+D++  +R        N  E + +    N+ +V  DG+ T D   V+VLA+TNR   LD A++R  RL R + ++LP    R +I    L   +L  +S    +    +  G+SG+
Sbjct:  359 AKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTL----NQLLVEMDGMGTTD--HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGA 519          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 37/109 (33.94%), Postives = 60/109 (55.05%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 325
            AKAVATE    F++I    + + + GE E  V+ VF  A   +P V+F DE+DS+   R N  +    M ++ ++ +   D +   + + V V+ ATNRP  LD +++R
Sbjct:  705 AKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLR 813          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: TBP7_CAEBR (TAT-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 52/168 (30.95%), Postives = 82/168 (48.81%), Query Frame = 2
Query:    2 AKAVATEA--GANFINISM---SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAK--EELASDVDLEGNCNMADGYSGSXSK 478
            A+A+A E   GAN +   M   +   SKW GE E+ ++ +F  A  + PS++F DE+D +   R +  + +    + +  +   DGL    +  V+V+ ATNR   LD A+ R  R  R L  +LPD   R  I+ +  +K  E   +   L+G      GY G+  K
Sbjct:  456 ARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSK-QDQIHASIVSTLLALMDGL--DGRGEVVVIGATNRLDSLDPALRRPGRFDRELRFSLPDLNARRHILDIHTSKWEENKPTPETLDGIAEKTSGYCGADLK 620          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 46/160 (28.75%), Postives = 85/160 (53.12%), Query Frame = 2
Query:    5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA---PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            KAVA E GA  I +S  +I     GE E+ ++ +F  A + A   P+++F+DEVD++  +R +       R +  + +   DG+ + +K  ++ +AAT+RP  +D A+ R  R  R +++  P    R+ I+ ++++      DVD     ++  GY G+
Sbjct:  243 KAVAREVGAYVIGLSGPAIHGSRPGESEENLRKIFEKAREAACSGPALLFIDEVDALCPKRGHSNSAPENRVVA-QLLTLMDGIDSDNK--MVTVAATSRPDAIDPALRRPGRFDREVIIGTPTHKQRQAILEMMISNMPTDRDVDAAALADVTVGYVGA 399          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 44/156 (28.21%), Postives = 80/156 (51.28%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYS 463
            A A+++     FI+I    +  K+ G+ E+ V+ +FS A    P V+F DE DS+  RR         R + N+ +   DG  + D   V ++AAT RP  +D A++R  RL + +  +LP+   R ++++ +  +  + +   L+    + DGY+
Sbjct:  657 ASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGVTDRVV-NQILTQMDGAESLDG--VYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYT 809          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
FIGL2_HUMAN2.486e-1129.68Putative fidgetin-like protein 2 OS=Homo sapiens G... [more]
YHI5_SCHPO4.240e-1134.78Uncharacterized AAA domain-containing protein P22H... [more]
SPG7_MOUSE5.537e-1131.74Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
SPG7_HUMAN5.537e-1131.74Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
PEX6_SCHPO5.537e-1133.94Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
TBP7_CAEBR7.232e-1130.95TAT-binding homolog 7 OS=Caenorhabditis briggsae G... [more]
SPA5L_XENTR7.232e-1128.75Spermatogenesis-associated protein 5-like protein ... [more]
PEX1_SCHPO9.445e-1128.21Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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