FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10284 contig Ccv1_Contig10284:1..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.147e-33
Identity = 72/161 (44.72%), Postives = 106/161 (65.84%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVATE G  F N+S S++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE      +GYSG+
Sbjct:  258 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGA 418          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.147e-33
Identity = 72/161 (44.72%), Postives = 106/161 (65.84%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVATE G  F N+S S++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE      +GYSG+
Sbjct:  258 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGA 418          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.147e-33
Identity = 73/156 (46.79%), Postives = 107/156 (68.59%), Query Frame = 2
Query:    5 KAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR-VILAKEELASDVDLEGNCNMADGYSGS 469
            + VA++  A F NIS SS+TSKW GEGEK V+A+FS+A    PSV+F+DE+DS+L  R +  EHE+ R++K EF+V  DG+ T   ER+LVL ATNRP +LDEA  RR  +RL + LP+  +R +I++ +++      ++ +LE    + DGYSG+
Sbjct:  367 RCVASQCKATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSR-SESEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPESRTQIVQNLLVGTRHDITNHNLERIRELTDGYSGA 521          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.779e-33
Identity = 72/161 (44.72%), Postives = 105/161 (65.22%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVATE    F N+S S++TSK+ GE EK V+ +F +A   +P+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV+L       +GYSG+
Sbjct:  259 AKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGA 419          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.779e-33
Identity = 72/161 (44.72%), Postives = 105/161 (65.22%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVATE G  F N+S S++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R  ++++ L + EL  D+ LE      +GYSG+
Sbjct:  258 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRTDLLKINLREVELDPDIQLEDIAEKIEGYSGA 418          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.497e-32
Identity = 69/159 (43.40%), Postives = 105/159 (66.04%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGSXSK 478
            AKAVA  AG  FIN+ +S++T KW+GE +K   AVFS+A K  P+++F+DE+DS L  R++  +HE+   MK +FM  WDG  +   ++++V+ ATNRP D+D A++RR+  R  V +P+A  R +I+ VIL  E++ + V+L      A+G SGS  K
Sbjct:  134 AKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQS-HDHESTAMMKAQFMTLWDGF-SSSGDQIIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLK 290          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 65/157 (41.40%), Postives = 106/157 (67.52%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            A+A+A+E+ + F  +S + ++SKW G+ EK V+ +F LA   APS++F+DE+D++ G+R N GEHEA R++K+EF+V  DG + K D  RV VLAATN P++LDEA+ RR  +R+ + LPD   R+K+I   +     + +++ +      +G+SG+
Sbjct:  243 ARAIASESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNSGEHEASRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGA 399          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 5.690e-32
Identity = 69/159 (43.40%), Postives = 104/159 (65.41%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL---ASDVDLEGNCNMADGYSGS 469
            AKAVA E+   F NIS SS+TSKW G+ EK ++ +F +A    PS++F+DE+DS+L  R    + E  R+MK EF+V +DG  +   +R+LV+ ATNRP++LD+AV+RR P+R+M+NLPD   R+++I   L K ++    S  D+    +   G+S S
Sbjct:  319 AKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCERSEK-DAEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLRRFPKRIMLNLPDTEARKELITNTLKKHDMMDGLSSSDIRYIASNTSGFSNS 476          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.706e-32
Identity = 70/156 (44.87%), Postives = 105/156 (67.31%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR-VILAKEELASDVDLEGNCNMADGYSG 466
            AKAVA E+   F +IS SS+TSK+ G+GEK V+A+F++A+   PS++F+DE+DS+L  R +  E EA R++K E +V +DG RT   ERVLV+ ATNRP DLD+A +RRL +R+ V LP+   R +II+ +++ +    +   +     +  GYSG
Sbjct:  434 AKAVAYESKVTFFSISSSSLTSKYVGDGEKLVRALFAVATHFQPSIIFIDEIDSLLTERSS-NESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALRRLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQQINSLAEVTQGYSG 588          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.706e-32
Identity = 72/175 (41.14%), Postives = 110/175 (62.86%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------------------KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA-KEELASDVDLEGNCNMADGYSGS 469
            A+AVATE+ + F +IS SS+TSK+ GE EK V+A+F++A K++PS++FVDE+DS++G R N  E+E+ R++KNEF+V W  L +                  +D  RVLVLAATN P+ +DEA  RR  RR  + LP+   R    + +L+ ++   ++ D +    + +GYSGS
Sbjct:  655 ARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKLSPSIIFVDEIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRVLVLAATNLPWSIDEAARRRFVRRQYIPLPEDQTRHVQFKKLLSHQKHTLTESDFDELVKITEGYSGS 829          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
KATL1_OTOGA5.147e-3344.72Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN5.147e-3344.72Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
FIGL1_CAEEL5.147e-3346.79Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
KTNA1_RAT8.779e-3344.72Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
KATL1_SORAR8.779e-3344.72Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
MSP1_CAEEL1.497e-3243.40Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
MEI1_CAEEL4.357e-3241.40Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
SPAST_CAEBR5.690e-3243.40Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
SPAST_DICDI9.706e-3244.87Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
SAP1_YEAST9.706e-3241.14Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 P... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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