FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10284 contig Ccv1_Contig10284:1..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.706e-32
Identity = 69/160 (43.12%), Postives = 105/160 (65.62%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVATE    F N+S S++TSK+ GE EK V+ +F +A   AP+ +F+DE+DS+  RR    EHEA R++K E +V  DG+         + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R  ++++ L + +LA+DV+++      +GYSG+
Sbjct:  254 AKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGA 413          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.824e-31
Identity = 68/159 (42.77%), Postives = 102/159 (64.15%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV---DLEGNCNMADGYSGS 469
            AKAVA E+   F NIS SS+TSKW G+ EK ++ +F +A    PS++F+DE+DS+L  R    + E  R+MK EF+V +DG  +   +R+LV+ ATNRP +LD+AV+RR P+R+M+NLPD   R+++I   L K  +   +   D+    +   G+S S
Sbjct:  289 AKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEK-DAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLRRFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNS 446          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 4.817e-31
Identity = 71/161 (44.10%), Postives = 110/161 (68.32%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-DLEGNCNMADGYSGSXSKT 481
            AK++A++A A F +I+ SS+TSKW G+ EK VK +F++A+   P+++F+DEVDS+L +R +  E+E+  ++KNEF+++ DG  + ++ RVLV+ ATNRP +LDEAV RR  RRL V LP    R+KII  ++ + +   DV  +     + DGYSG+   T
Sbjct:  300 AKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR-SANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDT 459          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.291e-31
Identity = 68/160 (42.50%), Postives = 109/160 (68.12%), Query Frame = 2
Query:    2 AKAVATEAGAN-FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMAD---GYSGS 469
            A+AVA E G+  F+N+S +S+TSKW G+ EK V+A+F +A    P+++F+DE+DS+L  R N  E E  R+MK EF++  DG+ +   +R+LV+ ATNRP +LD A++RR P+R+++++P+A  R K+I  +L K + + D+ L     +A+   GYS S
Sbjct:  228 ARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTIIFIDEIDSILCER-NEKETEVSRRMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILRRFPKRILIDVPNAAARLKLIMSLLEKTKTSFDLGLTQRQILAEWTHGYSNS 386          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.391e-30
Identity = 73/165 (44.24%), Postives = 106/165 (64.24%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-DLEGNCNMADGYSGS 469
            A+AVATE+ + F +IS SS+TSK+ GE EK V+A+F+LA K++PS++FVDE+DS+L  R + G EHE  R++K EF++ W  L       +T D  RVLVLAATN P+ +D+A  RR  RR  + LPD   R   +  +L  ++ +  + D+E      + YSGS
Sbjct:  509 ARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARRRFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLEDIEAIVKATEYYSGS 673          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.122e-30
Identity = 72/158 (45.57%), Postives = 104/158 (65.82%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELASDVDLEGNCNMADGYSGS 469
            AKAVATEAG+ F +IS S + SKW GE E+ V+ +F +A +  PS++F+DE+DS+ G R + GE E+ R++K EF+V  +G+  KD+  VLVL ATN P+ LD A+ RR  +R+ + LP+A  R ++  + + K   EL S  D +    M DGYSGS
Sbjct:  179 AKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSR-SEGESESSRRIKTEFLVQMNGV-GKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARARMFELNVGKIPSELTSQ-DFKELAKMTDGYSGS 333          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.122e-30
Identity = 74/165 (44.85%), Postives = 105/165 (63.64%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGNCNMADGYSGS 469
            A+AVATEA A F +IS SS+TSK+ G+ EK V+A+F +A +   SV+FVDE+DS+L  R + G EHE+ R++K EF++ W  L       +T    RVLVLAATN P+ +DEA  RR  +R  + LP+   R K +  +L  +    ++ DLE   N+ +GYSGS
Sbjct:  429 ARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDSGNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEAARRRFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEEDLEELVNLTEGYSGS 593          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.509e-29
Identity = 74/164 (45.12%), Postives = 103/164 (62.80%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL------AKEELASDVDLEGNCNMADGYSGS 469
            AKAVATE    F NIS S+I SKW G+ EK V+ +F LA   APS +F+DE++S++ +R     GEHE  R+MK E +V  DGL   D + V VLAA+N P++LD A++RRL +R++V+LP    R+ +I+  L      +  EL +D+D        DGYSGS
Sbjct:  308 AKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSD-DLVFVLAASNLPWELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGS 470          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 5.889e-29
Identity = 69/167 (41.32%), Postives = 110/167 (65.87%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDK-----ERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGNCNMADGYSGS 469
            AKAVATE+ + F ++S SS+ SK+ GE EK V+A+F +A K++PS++F+DE+DSML  R +  E+E+ R++K E ++ W  L     +++D+      RVLVL ATN P+ +D+A  RR  R+L + LPD   R   ++ ++AK++ +  D+D E    M +G+SGS
Sbjct:  521 AKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSD-NENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARRRFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGS 686          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.231e-27
Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV-------ILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVATEA + F ++S S + SKW GE EK VK +F++A +  PS++F+DEVD++ G R   GE EA R++K E +V  +G+   D + VLVL ATN P+ LD A+ RR  RR+ + LPD   R  +  +       +L KE      D      M +GYSGS
Sbjct:  183 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR-GEGESEASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGS 337          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
KTNA1_DANRE9.706e-3243.13Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
SPAST_CAEEL2.824e-3142.77Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
FIGL1_DROME4.817e-3144.10Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
SPAST_BRUMA6.291e-3142.50Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
YKX4_SCHPO2.391e-3044.24Uncharacterized AAA domain-containing protein C328... [more]
VPS4_SCHPO3.122e-3045.57Suppressor protein of bem1/bed5 double mutants OS=... [more]
SUR2_SCHPO3.122e-3044.85Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]
KATL2_XENTR4.509e-2945.12Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
TBP6_YEAST5.889e-2941.32Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
VPS4_YEAST3.231e-2742.94Vacuolar protein sorting-associated protein 4 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
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