FC875636
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 9.401e-27 Identity = 68/158 (43.04%), Postives = 99/158 (62.66%), Query Frame = 2 Query: 2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469 AKAVATEA + F +IS S + SKW GE EK VK +F LA + PS++F+DE+DS+ G R + E EA R++K EF+V G+ D + +LVL ATN P+ LD A+ RR +R+ + LP+A R + R+ L + + ++ D + DGYSG+ Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGA 339
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3) HSP 1 Score: 118.627 bits (296), Expect = 1.604e-26 Identity = 70/167 (41.92%), Postives = 103/167 (61.68%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGNCNMADGYSGSXSK 478 AKAVATE F NIS S+I SKW G+ EK V+ +F LA APS +F+DE++S++ +R + GEHE +MK E +V DGL + ++ V VLAA+N P++LD A++RRL +R++V+LP R+ +I L EL ++++ +GYSGS K Sbjct: 304 AKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIK 469
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 7.959e-26 Identity = 70/167 (41.92%), Postives = 101/167 (60.48%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGNCNMADGYSGSXSK 478 AKAVATE F NIS S+I SKW G+ EK V+ +F LA APS +F+DE++S++ +R GEHE +MK E +V DGL + ++ V VLAA+N P++LD A++RRL +R++V+LP R+ +I L EL + ++ +GYSGS K Sbjct: 305 AKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIK 470
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.039e-25 Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 2 Query: 2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469 AKAVATEA + F +IS S + SKW GE EK VK +F LA + PS++F+DE+DS+ G R + E EA R++K EF+V G+ D + +LVL ATN P+ LD A+ RR +R+ + LP+A R + ++ L + ++ D +GYSG+ Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGA 339
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.358e-25 Identity = 62/158 (39.24%), Postives = 98/158 (62.03%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469 AKAVA E+ ANFI++ + SKW GE EK+V+ +F A ++AP V+F DE+DS+ RR G+ ++ ++ + DGL ++ + V+V+AATNRP +D A++R RL R + + PD R +I ++ L + LA DV++E +GYSG+ Sbjct: 506 AKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGL--EELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGA 661 HSP 2 Score: 105.916 bits (263), Expect = 1.076e-22 Identity = 63/159 (39.62%), Postives = 97/159 (61.01%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469 AKAVA E A+FI IS I SK++GE E+ ++ +F A + APS++F+DE+DS+ +RE GE E R++ + + DGL + V+V+AATNRP +D A+ R R R + + +PD R++I+ + K LA DVDLE + +G+ G+ Sbjct: 233 AKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTGEVE--RRVVAQLLALMDGLEARGD--VIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGA 387
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 1.773e-25 Identity = 66/158 (41.77%), Postives = 96/158 (60.76%), Query Frame = 2 Query: 2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469 AKAVATEA + F +IS S + SKW GE EK VK +F LA + PS++F+DE+DS+ G R + E EA R++K EF+V G+ D + +LVL ATN P+ LD A+ RR +R+ + LP+ R + ++ L + ++ D DGYSG+ Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGA 339
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25 Identity = 64/157 (40.76%), Postives = 97/157 (61.78%), Query Frame = 2 Query: 2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV-ILAKEELASDVDLEGNCNMADGYSGS 469 AKAVATE + F +IS S I +KW G+ EK VK +F +A + SV+F+DEVDS+ R N E E+ R++K EF++ +G+ D + +LVLAATN P+ LD A+ RR +R+ + LP+ R K+ ++ I + D + ++ +GYSGS Sbjct: 185 AKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSR-NDQESESARRIKTEFLIQMNGV-GNDSDGILVLAATNIPWGLDLAIRRRFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGS 339
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25 Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 2 Query: 2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469 AKAVATEA + F ++S S + SKW GE EK VK +F LA + PS++F+DEVDS+ G R N E EA R++K EF+V G+ + + LVL ATN P+ LD A+ RR +R+ + LP+ R ++ R+ L + +D ++ +GYSG+ Sbjct: 177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGA 332
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25 Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 2 Query: 2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469 AKAVATEA + F ++S S + SKW GE EK VK +F LA + PS++F+DEVDS+ G R N E EA R++K EF+V G+ + + LVL ATN P+ LD A+ RR +R+ + LP+ R ++ R+ L + +D ++ +GYSG+ Sbjct: 177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGA 332
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25 Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 2 Query: 2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469 AKAVATEA + F ++S S + SKW GE EK VK +F LA + PS++F+DEVDS+ G R N E EA R++K EF+V G+ + + LVL ATN P+ LD A+ RR +R+ + LP+ R ++ R+ L + +D ++ +GYSG+ Sbjct: 177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGA 332 The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 348
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bpback to top |