FC875636

Overview
NameFC875636
Unique NameFC875636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10284 contig Ccv1_Contig10284:1..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 9.401e-27
Identity = 68/158 (43.04%), Postives = 99/158 (62.66%), Query Frame = 2
Query:    2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469
            AKAVATEA  + F +IS S + SKW GE EK VK +F LA +  PS++F+DE+DS+ G R +  E EA R++K EF+V   G+   D + +LVL ATN P+ LD A+ RR  +R+ + LP+A  R  + R+ L + +   ++ D +      DGYSG+
Sbjct:  184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGA 339          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.604e-26
Identity = 70/167 (41.92%), Postives = 103/167 (61.68%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGNCNMADGYSGSXSK 478
            AKAVATE    F NIS S+I SKW G+ EK V+ +F LA   APS +F+DE++S++ +R   + GEHE   +MK E +V  DGL  + ++ V VLAA+N P++LD A++RRL +R++V+LP    R+ +I   L         EL ++++        +GYSGS  K
Sbjct:  304 AKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIK 469          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 7.959e-26
Identity = 70/167 (41.92%), Postives = 101/167 (60.48%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGNCNMADGYSGSXSK 478
            AKAVATE    F NIS S+I SKW G+ EK V+ +F LA   APS +F+DE++S++ +R     GEHE   +MK E +V  DGL  + ++ V VLAA+N P++LD A++RRL +R++V+LP    R+ +I   L         EL + ++        +GYSGS  K
Sbjct:  305 AKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIK 470          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.039e-25
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 2
Query:    2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469
            AKAVATEA  + F +IS S + SKW GE EK VK +F LA +  PS++F+DE+DS+ G R +  E EA R++K EF+V   G+   D + +LVL ATN P+ LD A+ RR  +R+ + LP+A  R  + ++ L   +   ++ D        +GYSG+
Sbjct:  184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGA 339          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.358e-25
Identity = 62/158 (39.24%), Postives = 98/158 (62.03%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVA E+ ANFI++    + SKW GE EK+V+ +F  A ++AP V+F DE+DS+  RR   G+     ++ ++ +   DGL  ++ + V+V+AATNRP  +D A++R  RL R + +  PD   R +I ++ L  + LA DV++E      +GYSG+
Sbjct:  506 AKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGL--EELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGA 661          

HSP 2 Score: 105.916 bits (263), Expect = 1.076e-22
Identity = 63/159 (39.62%), Postives = 97/159 (61.01%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVA E  A+FI IS   I SK++GE E+ ++ +F  A + APS++F+DE+DS+  +RE   GE E  R++  + +   DGL  +    V+V+AATNRP  +D A+ R  R  R + + +PD   R++I+ +   K  LA DVDLE    + +G+ G+
Sbjct:  233 AKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTGEVE--RRVVAQLLALMDGLEARGD--VIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGA 387          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.773e-25
Identity = 66/158 (41.77%), Postives = 96/158 (60.76%), Query Frame = 2
Query:    2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469
            AKAVATEA  + F +IS S + SKW GE EK VK +F LA +  PS++F+DE+DS+ G R +  E EA R++K EF+V   G+   D + +LVL ATN P+ LD A+ RR  +R+ + LP+   R  + ++ L   +   ++ D        DGYSG+
Sbjct:  184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGA 339          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25
Identity = 64/157 (40.76%), Postives = 97/157 (61.78%), Query Frame = 2
Query:    2 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV-ILAKEELASDVDLEGNCNMADGYSGS 469
            AKAVATE  + F +IS S I +KW G+ EK VK +F +A +   SV+F+DEVDS+   R N  E E+ R++K EF++  +G+   D + +LVLAATN P+ LD A+ RR  +R+ + LP+   R K+ ++ I +        D +   ++ +GYSGS
Sbjct:  185 AKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSR-NDQESESARRIKTEFLIQMNGV-GNDSDGILVLAATNIPWGLDLAIRRRFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGS 339          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 2
Query:    2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469
            AKAVATEA  + F ++S S + SKW GE EK VK +F LA +  PS++F+DEVDS+ G R N  E EA R++K EF+V   G+   + +  LVL ATN P+ LD A+ RR  +R+ + LP+   R ++ R+ L +     +D ++       +GYSG+
Sbjct:  177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGA 332          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 2
Query:    2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469
            AKAVATEA  + F ++S S + SKW GE EK VK +F LA +  PS++F+DEVDS+ G R N  E EA R++K EF+V   G+   + +  LVL ATN P+ LD A+ RR  +R+ + LP+   R ++ R+ L +     +D ++       +GYSG+
Sbjct:  177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGA 332          
BLAST of FC875636 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 2
Query:    2 AKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGNCNMADGYSGS 469
            AKAVATEA  + F ++S S + SKW GE EK VK +F LA +  PS++F+DEVDS+ G R N  E EA R++K EF+V   G+   + +  LVL ATN P+ LD A+ RR  +R+ + LP+   R ++ R+ L +     +D ++       +GYSG+
Sbjct:  177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSR-NENESEAARRIKTEFLVQMQGV-GNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGA 332          
The following BLAST results are available for this feature:
BLAST of FC875636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
VPS4B_MOUSE9.401e-2743.04Vacuolar protein sorting-associated protein 4B OS=... [more]
KATL2_HUMAN1.604e-2641.92Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
KATL2_MOUSE7.959e-2641.92Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
VPS4B_BOVIN1.039e-2541.77Vacuolar protein sorting-associated protein 4B OS=... [more]
Y1297_ARCFU1.358e-2539.24Cell division cycle protein 48 homolog AF_1297 OS=... [more]
VPS4B_HUMAN1.773e-2541.77Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4_DICDI2.316e-2540.76Vacuolar protein sorting-associated protein 4 OS=D... [more]
VPS4A_RAT2.316e-2541.77Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE2.316e-2541.77Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN2.316e-2541.77Vacuolar protein sorting-associated protein 4A OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401B07EF CTVClemen1 Citrus clementina cDNA clone C31401B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875636 ID=FC875636; Name=FC875636; organism=Citrus clementina; type=EST; length=502bp
TGCGAAGGCTGTTGCAACTGAGGCTGGTGCAAACTTTATCAACATATCCA
TGTCAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAA
GCAGTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGA
TGAGGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGGGAGCATGAAG
CTATGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGC
ACAAAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTT
TGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTA
ACTTGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCC
AAAGAAGAATTGGCATCTGATGTGGATTTGGAAGGAAATTGCAACATGGC
TGATGGGTACTCTGGAAGTGANTCTAAGACCTGTGTGTGACTGCCGCACA
TT
back to top